Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21491

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b22024 and SM_b21490 are separated by 135 nucleotidesSM_b21490 and SM_b21491 are separated by 20 nucleotidesSM_b21491 and SM_b21492 are separated by 242 nucleotidesSM_b21492 and SM_b21493 are separated by 33 nucleotides SM_b22024: SM_b22024 - cytochrome O ubiquinol oxidase CyoD, at 1,412,124 to 1,412,525 _b22024 SM_b21490: SM_b21490 - hypothetical protein, at 1,412,661 to 1,413,416 _b21490 SM_b21491: SM_b21491 - hypothetical protein, at 1,413,437 to 1,413,967 _b21491 SM_b21492: SM_b21492 - hypothetical protein, at 1,414,210 to 1,414,872 _b21492 SM_b21493: SM_b21493 - AsnC family transcriptional regulator, at 1,414,906 to 1,415,367 _b21493 Position (kb) 1413 1414Strain fitness (log2 ratio) -1 0 1 2at 1412.566 kb on + strandat 1412.567 kb on - strandat 1412.632 kb on + strandat 1412.946 kb on + strand, within SM_b21490at 1413.363 kb on + strandat 1413.364 kb on - strandat 1413.603 kb on + strand, within SM_b21491at 1413.603 kb on + strand, within SM_b21491at 1413.604 kb on - strand, within SM_b21491at 1413.604 kb on - strand, within SM_b21491at 1413.630 kb on + strand, within SM_b21491at 1413.720 kb on + strand, within SM_b21491at 1413.721 kb on - strand, within SM_b21491at 1413.792 kb on + strand, within SM_b21491at 1413.793 kb on - strand, within SM_b21491at 1413.886 kb on - strand, within SM_b21491at 1413.886 kb on - strand, within SM_b21491at 1413.886 kb on - strand, within SM_b21491at 1413.886 kb on - strand, within SM_b21491at 1414.524 kb on + strand, within SM_b21492at 1414.526 kb on + strand, within SM_b21492at 1414.587 kb on - strand, within SM_b21492at 1414.676 kb on + strand, within SM_b21492at 1414.677 kb on - strand, within SM_b21492at 1414.677 kb on - strand, within SM_b21492at 1414.677 kb on - strand, within SM_b21492at 1414.677 kb on - strand, within SM_b21492at 1414.710 kb on - strand, within SM_b21492at 1414.848 kb on + strandat 1414.889 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,412,566 + -0.9
1,412,567 - +0.5
1,412,632 + -1.4
1,412,946 + SM_b21490 0.38 -1.4
1,413,363 + -0.6
1,413,364 - +0.3
1,413,603 + SM_b21491 0.31 +0.8
1,413,603 + SM_b21491 0.31 +1.7
1,413,604 - SM_b21491 0.31 -0.8
1,413,604 - SM_b21491 0.31 +1.5
1,413,630 + SM_b21491 0.36 +1.1
1,413,720 + SM_b21491 0.53 +2.4
1,413,721 - SM_b21491 0.53 +0.9
1,413,792 + SM_b21491 0.67 +1.2
1,413,793 - SM_b21491 0.67 +2.2
1,413,886 - SM_b21491 0.85 +1.3
1,413,886 - SM_b21491 0.85 +0.9
1,413,886 - SM_b21491 0.85 +1.5
1,413,886 - SM_b21491 0.85 +1.9
1,414,524 + SM_b21492 0.47 +1.3
1,414,526 + SM_b21492 0.48 +0.7
1,414,587 - SM_b21492 0.57 +1.3
1,414,676 + SM_b21492 0.70 +0.0
1,414,677 - SM_b21492 0.70 +0.1
1,414,677 - SM_b21492 0.70 -0.4
1,414,677 - SM_b21492 0.70 +1.3
1,414,677 - SM_b21492 0.70 +0.9
1,414,710 - SM_b21492 0.75 -0.1
1,414,848 + -0.5
1,414,889 + +0.3

Or see this region's nucleotide sequence