Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21207 and SM_b21208 overlap by 4 nucleotides SM_b21208 and SM_b21209 are separated by 95 nucleotides
SM_b21207: SM_b21207 - hypothetical protein, at 959,968 to 960,972
_b21207
SM_b21208: SM_b21208 - TetR family transcriptional regulator, at 960,969 to 961,691
_b21208
SM_b21209: SM_b21209 - two-component sensor histidine kinase, at 961,787 to 963,139
_b21209
Position (kb) 960
961
962 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 960.149 kb on + strand, within SM_b21207 at 960.149 kb on + strand, within SM_b21207 at 960.149 kb on + strand, within SM_b21207 at 960.150 kb on - strand, within SM_b21207 at 960.150 kb on - strand, within SM_b21207 at 960.150 kb on - strand, within SM_b21207 at 960.150 kb on - strand, within SM_b21207 at 960.153 kb on + strand, within SM_b21207 at 960.154 kb on - strand, within SM_b21207 at 960.154 kb on - strand, within SM_b21207 at 960.231 kb on - strand, within SM_b21207 at 960.231 kb on - strand, within SM_b21207 at 960.231 kb on - strand, within SM_b21207 at 960.270 kb on - strand, within SM_b21207 at 960.270 kb on - strand, within SM_b21207 at 960.270 kb on - strand, within SM_b21207 at 960.276 kb on + strand, within SM_b21207 at 960.424 kb on + strand, within SM_b21207 at 960.425 kb on - strand, within SM_b21207 at 960.543 kb on + strand, within SM_b21207 at 960.544 kb on - strand, within SM_b21207 at 960.604 kb on + strand, within SM_b21207 at 960.605 kb on - strand, within SM_b21207 at 961.078 kb on + strand, within SM_b21208 at 961.079 kb on - strand, within SM_b21208 at 961.223 kb on + strand, within SM_b21208 at 961.223 kb on + strand, within SM_b21208 at 961.224 kb on - strand, within SM_b21208 at 961.228 kb on + strand, within SM_b21208 at 961.228 kb on + strand, within SM_b21208 at 961.229 kb on - strand, within SM_b21208 at 961.477 kb on + strand, within SM_b21208 at 961.477 kb on + strand, within SM_b21208 at 961.477 kb on + strand, within SM_b21208 at 961.478 kb on - strand, within SM_b21208 at 961.478 kb on - strand, within SM_b21208 at 961.478 kb on - strand, within SM_b21208 at 961.478 kb on - strand, within SM_b21208 at 961.478 kb on - strand, within SM_b21208 at 961.681 kb on + strand at 961.811 kb on - strand at 961.927 kb on - strand, within SM_b21209 at 962.018 kb on + strand, within SM_b21209 at 962.019 kb on - strand, within SM_b21209 at 962.019 kb on - strand, within SM_b21209 at 962.019 kb on - strand, within SM_b21209 at 962.038 kb on + strand, within SM_b21209 at 962.038 kb on + strand, within SM_b21209 at 962.124 kb on - strand, within SM_b21209 at 962.269 kb on + strand, within SM_b21209 at 962.650 kb on - strand, within SM_b21209 at 962.654 kb on - strand, within SM_b21209 at 962.655 kb on + strand, within SM_b21209 at 962.656 kb on - strand, within SM_b21209 at 962.656 kb on - strand, within SM_b21209 at 962.656 kb on - strand, within SM_b21209 at 962.656 kb on - strand, within SM_b21209 at 962.656 kb on - strand, within SM_b21209 at 962.656 kb on - strand, within SM_b21209
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 960,149 + SM_b21207 0.18 -0.4 960,149 + SM_b21207 0.18 +0.5 960,149 + SM_b21207 0.18 -0.0 960,150 - SM_b21207 0.18 +1.1 960,150 - SM_b21207 0.18 -0.3 960,150 - SM_b21207 0.18 +0.6 960,150 - SM_b21207 0.18 -0.2 960,153 + SM_b21207 0.18 -0.1 960,154 - SM_b21207 0.19 +0.4 960,154 - SM_b21207 0.19 -2.6 960,231 - SM_b21207 0.26 -0.8 960,231 - SM_b21207 0.26 -0.4 960,231 - SM_b21207 0.26 -0.2 960,270 - SM_b21207 0.30 +1.4 960,270 - SM_b21207 0.30 -0.5 960,270 - SM_b21207 0.30 -0.8 960,276 + SM_b21207 0.31 +1.9 960,424 + SM_b21207 0.45 -0.3 960,425 - SM_b21207 0.45 -1.1 960,543 + SM_b21207 0.57 +0.5 960,544 - SM_b21207 0.57 -0.3 960,604 + SM_b21207 0.63 -0.3 960,605 - SM_b21207 0.63 -0.1 961,078 + SM_b21208 0.15 +0.0 961,079 - SM_b21208 0.15 +1.5 961,223 + SM_b21208 0.35 +0.6 961,223 + SM_b21208 0.35 +0.5 961,224 - SM_b21208 0.35 +2.4 961,228 + SM_b21208 0.36 +1.9 961,228 + SM_b21208 0.36 +0.2 961,229 - SM_b21208 0.36 +0.4 961,477 + SM_b21208 0.70 -3.2 961,477 + SM_b21208 0.70 +2.0 961,477 + SM_b21208 0.70 -0.1 961,478 - SM_b21208 0.70 +0.9 961,478 - SM_b21208 0.70 -0.1 961,478 - SM_b21208 0.70 -0.8 961,478 - SM_b21208 0.70 -0.5 961,478 - SM_b21208 0.70 -0.1 961,681 + +1.1 961,811 - -0.7 961,927 - SM_b21209 0.10 -3.2 962,018 + SM_b21209 0.17 +0.3 962,019 - SM_b21209 0.17 -1.6 962,019 - SM_b21209 0.17 -0.4 962,019 - SM_b21209 0.17 +0.1 962,038 + SM_b21209 0.19 -0.2 962,038 + SM_b21209 0.19 +0.1 962,124 - SM_b21209 0.25 -1.1 962,269 + SM_b21209 0.36 -0.4 962,650 - SM_b21209 0.64 -1.1 962,654 - SM_b21209 0.64 -0.3 962,655 + SM_b21209 0.64 +0.2 962,656 - SM_b21209 0.64 +0.8 962,656 - SM_b21209 0.64 -0.0 962,656 - SM_b21209 0.64 +0.5 962,656 - SM_b21209 0.64 -1.8 962,656 - SM_b21209 0.64 +0.9 962,656 - SM_b21209 0.64 -0.8
Or see this region's nucleotide sequence