Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21041 and SM_b21042 are separated by 116 nucleotides SM_b21042 and SM_b21043 are separated by 609 nucleotides
SM_b21041: SM_b21041 - hypothetical protein, at 659,874 to 661,109
_b21041
SM_b21042: SM_b21042 - peptidase T, at 661,226 to 662,467
_b21042
SM_b21043: SM_b21043 - hypothetical protein, at 663,077 to 663,646
_b21043
Position (kb) 661
662
663 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 660.315 kb on + strand, within SM_b21041 at 660.316 kb on - strand, within SM_b21041 at 660.316 kb on - strand, within SM_b21041 at 660.316 kb on - strand, within SM_b21041 at 660.416 kb on + strand, within SM_b21041 at 660.416 kb on + strand, within SM_b21041 at 660.442 kb on - strand, within SM_b21041 at 660.463 kb on - strand, within SM_b21041 at 660.642 kb on + strand, within SM_b21041 at 660.780 kb on + strand, within SM_b21041 at 660.802 kb on - strand, within SM_b21041 at 660.802 kb on - strand, within SM_b21041 at 660.802 kb on - strand, within SM_b21041 at 660.908 kb on + strand, within SM_b21041 at 660.908 kb on + strand, within SM_b21041 at 660.915 kb on - strand, within SM_b21041 at 660.915 kb on - strand, within SM_b21041 at 660.931 kb on - strand, within SM_b21041 at 661.125 kb on + strand at 661.125 kb on + strand at 661.140 kb on + strand at 661.141 kb on - strand at 661.141 kb on - strand at 661.582 kb on - strand, within SM_b21042 at 661.690 kb on + strand, within SM_b21042 at 661.690 kb on + strand, within SM_b21042 at 661.691 kb on - strand, within SM_b21042 at 662.198 kb on + strand, within SM_b21042 at 662.199 kb on - strand, within SM_b21042 at 662.340 kb on + strand, within SM_b21042 at 662.369 kb on + strand at 662.370 kb on - strand at 662.370 kb on - strand at 662.605 kb on - strand at 662.652 kb on + strand at 662.693 kb on + strand at 662.693 kb on + strand at 662.694 kb on - strand at 662.699 kb on - strand at 662.699 kb on - strand at 662.699 kb on - strand at 662.744 kb on + strand at 662.782 kb on - strand at 662.801 kb on + strand at 662.802 kb on - strand at 662.802 kb on - strand at 662.935 kb on - strand at 662.936 kb on + strand at 662.940 kb on + strand at 662.940 kb on + strand at 662.940 kb on + strand at 662.940 kb on + strand at 662.941 kb on - strand at 662.941 kb on - strand at 662.941 kb on - strand at 662.946 kb on + strand at 662.946 kb on + strand at 662.946 kb on + strand at 662.946 kb on + strand at 662.947 kb on - strand at 662.947 kb on - strand at 662.947 kb on - strand at 662.947 kb on - strand at 663.026 kb on + strand at 663.027 kb on - strand at 663.034 kb on - strand at 663.229 kb on + strand, within SM_b21043 at 663.229 kb on + strand, within SM_b21043 at 663.229 kb on + strand, within SM_b21043 at 663.229 kb on + strand, within SM_b21043 at 663.230 kb on - strand, within SM_b21043 at 663.230 kb on - strand, within SM_b21043 at 663.230 kb on - strand, within SM_b21043 at 663.230 kb on - strand, within SM_b21043 at 663.230 kb on - strand, within SM_b21043 at 663.230 kb on - strand, within SM_b21043 at 663.232 kb on - strand, within SM_b21043 at 663.232 kb on - strand, within SM_b21043 at 663.387 kb on + strand, within SM_b21043 at 663.391 kb on + strand, within SM_b21043 at 663.450 kb on + strand, within SM_b21043 at 663.450 kb on + strand, within SM_b21043
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 660,315 + SM_b21041 0.36 -0.3 660,316 - SM_b21041 0.36 +1.4 660,316 - SM_b21041 0.36 -0.5 660,316 - SM_b21041 0.36 -0.8 660,416 + SM_b21041 0.44 +0.9 660,416 + SM_b21041 0.44 -0.7 660,442 - SM_b21041 0.46 +0.1 660,463 - SM_b21041 0.48 -0.2 660,642 + SM_b21041 0.62 -0.3 660,780 + SM_b21041 0.73 -2.3 660,802 - SM_b21041 0.75 -0.1 660,802 - SM_b21041 0.75 -0.4 660,802 - SM_b21041 0.75 -0.0 660,908 + SM_b21041 0.84 +0.4 660,908 + SM_b21041 0.84 -0.3 660,915 - SM_b21041 0.84 +2.2 660,915 - SM_b21041 0.84 +0.1 660,931 - SM_b21041 0.86 -0.8 661,125 + -1.2 661,125 + +0.3 661,140 + -0.9 661,141 - +0.3 661,141 - -0.8 661,582 - SM_b21042 0.29 +0.2 661,690 + SM_b21042 0.37 +0.1 661,690 + SM_b21042 0.37 -0.7 661,691 - SM_b21042 0.37 +0.3 662,198 + SM_b21042 0.78 -0.3 662,199 - SM_b21042 0.78 -1.9 662,340 + SM_b21042 0.90 -2.2 662,369 + -2.2 662,370 - -3.1 662,370 - -2.2 662,605 - -0.0 662,652 + -0.9 662,693 + -0.0 662,693 + -1.0 662,694 - +1.4 662,699 - -2.6 662,699 - +0.4 662,699 - +0.6 662,744 + +0.4 662,782 - -0.4 662,801 + +0.4 662,802 - +0.0 662,802 - -0.9 662,935 - +0.7 662,936 + +2.0 662,940 + -0.1 662,940 + +1.6 662,940 + -1.0 662,940 + +0.7 662,941 - -0.6 662,941 - -0.0 662,941 - +1.3 662,946 + +0.2 662,946 + -0.4 662,946 + +0.2 662,946 + -0.4 662,947 - -0.3 662,947 - +0.6 662,947 - +0.7 662,947 - -1.5 663,026 + +0.2 663,027 - -0.2 663,034 - -0.0 663,229 + SM_b21043 0.27 +0.2 663,229 + SM_b21043 0.27 +0.2 663,229 + SM_b21043 0.27 +0.1 663,229 + SM_b21043 0.27 +0.4 663,230 - SM_b21043 0.27 +2.4 663,230 - SM_b21043 0.27 +1.6 663,230 - SM_b21043 0.27 +0.7 663,230 - SM_b21043 0.27 -1.3 663,230 - SM_b21043 0.27 +4.4 663,230 - SM_b21043 0.27 +0.3 663,232 - SM_b21043 0.27 +2.9 663,232 - SM_b21043 0.27 +0.7 663,387 + SM_b21043 0.54 +1.1 663,391 + SM_b21043 0.55 -0.6 663,450 + SM_b21043 0.65 +0.2 663,450 + SM_b21043 0.65 +0.9
Or see this region's nucleotide sequence