Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20703

Experiment: Parafilmed volatile agar plate with no fungus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20702 and SM_b20703 are separated by 51 nucleotidesSM_b20703 and SM_b20704 are separated by 276 nucleotides SM_b20702: SM_b20702 - regulatory protein, at 1,502,959 to 1,504,623 _b20702 SM_b20703: SM_b20703 - hypothetical protein, at 1,504,675 to 1,505,184 _b20703 SM_b20704: SM_b20704 - glycogen synthase, at 1,505,461 to 1,506,921 _b20704 Position (kb) 1504 1505 1506Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1503.874 kb on + strand, within SM_b20702at 1503.875 kb on - strand, within SM_b20702at 1503.877 kb on + strand, within SM_b20702at 1503.877 kb on + strand, within SM_b20702at 1503.877 kb on + strand, within SM_b20702at 1503.878 kb on - strandat 1503.985 kb on + strand, within SM_b20702at 1504.007 kb on - strand, within SM_b20702at 1504.055 kb on + strand, within SM_b20702at 1504.282 kb on - strandat 1504.443 kb on - strand, within SM_b20702at 1504.443 kb on - strand, within SM_b20702at 1504.645 kb on + strandat 1504.676 kb on + strandat 1504.676 kb on + strandat 1504.677 kb on - strandat 1504.685 kb on + strandat 1504.685 kb on + strandat 1504.685 kb on + strandat 1504.686 kb on - strandat 1504.686 kb on - strandat 1504.686 kb on - strandat 1504.686 kb on - strandat 1504.686 kb on - strandat 1505.043 kb on + strand, within SM_b20703at 1505.078 kb on + strand, within SM_b20703at 1505.078 kb on + strand, within SM_b20703at 1505.078 kb on + strand, within SM_b20703at 1505.079 kb on - strand, within SM_b20703at 1505.155 kb on + strandat 1505.156 kb on - strandat 1505.156 kb on - strandat 1505.214 kb on - strandat 1505.265 kb on + strandat 1505.352 kb on - strandat 1505.468 kb on + strandat 1505.468 kb on + strandat 1505.468 kb on + strandat 1505.525 kb on + strandat 1505.590 kb on + strandat 1505.590 kb on + strandat 1505.590 kb on + strandat 1505.725 kb on + strand, within SM_b20704at 1505.725 kb on + strand, within SM_b20704at 1505.725 kb on + strand, within SM_b20704at 1505.726 kb on - strand, within SM_b20704at 1505.726 kb on - strand, within SM_b20704at 1505.746 kb on + strand, within SM_b20704at 1505.746 kb on + strand, within SM_b20704at 1505.747 kb on - strand, within SM_b20704at 1505.770 kb on + strand, within SM_b20704at 1505.899 kb on + strand, within SM_b20704at 1505.900 kb on - strand, within SM_b20704at 1505.909 kb on - strand, within SM_b20704at 1505.909 kb on - strand, within SM_b20704at 1505.983 kb on + strand, within SM_b20704at 1505.984 kb on - strand, within SM_b20704at 1506.016 kb on + strand, within SM_b20704at 1506.109 kb on + strand, within SM_b20704at 1506.110 kb on - strand, within SM_b20704

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
remove
1,503,874 + SM_b20702 0.55 -0.4
1,503,875 - SM_b20702 0.55 -2.9
1,503,877 + SM_b20702 0.55 -1.2
1,503,877 + SM_b20702 0.55 -0.5
1,503,877 + SM_b20702 0.55 -0.9
1,503,878 - +0.0
1,503,985 + SM_b20702 0.62 -0.8
1,504,007 - SM_b20702 0.63 +0.2
1,504,055 + SM_b20702 0.66 +0.5
1,504,282 - -1.0
1,504,443 - SM_b20702 0.89 +0.3
1,504,443 - SM_b20702 0.89 -2.0
1,504,645 + -0.1
1,504,676 + -0.4
1,504,676 + +1.2
1,504,677 - +0.3
1,504,685 + -0.8
1,504,685 + +0.6
1,504,685 + +1.3
1,504,686 - +1.8
1,504,686 - +0.0
1,504,686 - +0.3
1,504,686 - +1.6
1,504,686 - -0.5
1,505,043 + SM_b20703 0.72 -0.2
1,505,078 + SM_b20703 0.79 -0.9
1,505,078 + SM_b20703 0.79 -0.1
1,505,078 + SM_b20703 0.79 -0.8
1,505,079 - SM_b20703 0.79 -1.7
1,505,155 + +0.6
1,505,156 - +0.5
1,505,156 - -0.7
1,505,214 - +0.6
1,505,265 + -2.7
1,505,352 - +0.4
1,505,468 + -2.6
1,505,468 + -1.4
1,505,468 + +1.0
1,505,525 + +0.2
1,505,590 + -1.5
1,505,590 + +0.8
1,505,590 + -0.2
1,505,725 + SM_b20704 0.18 -2.1
1,505,725 + SM_b20704 0.18 +2.4
1,505,725 + SM_b20704 0.18 -0.8
1,505,726 - SM_b20704 0.18 -1.8
1,505,726 - SM_b20704 0.18 +0.0
1,505,746 + SM_b20704 0.20 -1.1
1,505,746 + SM_b20704 0.20 +0.9
1,505,747 - SM_b20704 0.20 +0.5
1,505,770 + SM_b20704 0.21 +0.9
1,505,899 + SM_b20704 0.30 +0.4
1,505,900 - SM_b20704 0.30 +0.7
1,505,909 - SM_b20704 0.31 -1.6
1,505,909 - SM_b20704 0.31 -2.7
1,505,983 + SM_b20704 0.36 +0.5
1,505,984 - SM_b20704 0.36 -0.4
1,506,016 + SM_b20704 0.38 +0.5
1,506,109 + SM_b20704 0.44 -2.1
1,506,110 - SM_b20704 0.44 -0.3

Or see this region's nucleotide sequence