Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20680

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20679 and SM_b20680 are separated by 5 nucleotidesSM_b20680 and SM_b20681 are separated by 54 nucleotides SM_b20679: SM_b20679 - tartronate semialdehyde reductase, at 1,480,708 to 1,481,592 _b20679 SM_b20680: SM_b20680 - hydroxypyruvate isomerase, at 1,481,598 to 1,482,413 _b20680 SM_b20681: SM_b20681 - glyoxylate carboligase, at 1,482,468 to 1,484,252 _b20681 Position (kb) 1481 1482 1483Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1480.710 kb on - strandat 1481.081 kb on + strand, within SM_b20679at 1481.245 kb on - strand, within SM_b20679at 1481.246 kb on + strand, within SM_b20679at 1481.247 kb on - strand, within SM_b20679at 1481.345 kb on + strand, within SM_b20679at 1481.345 kb on + strand, within SM_b20679at 1481.346 kb on - strand, within SM_b20679at 1481.349 kb on - strand, within SM_b20679at 1481.391 kb on + strand, within SM_b20679at 1481.583 kb on + strandat 1481.583 kb on + strandat 1481.583 kb on + strandat 1481.599 kb on + strandat 1481.599 kb on + strandat 1481.599 kb on + strandat 1481.599 kb on + strandat 1481.600 kb on - strandat 1481.600 kb on - strandat 1481.600 kb on - strandat 1481.693 kb on - strand, within SM_b20680at 1481.753 kb on - strand, within SM_b20680at 1481.753 kb on - strand, within SM_b20680at 1481.805 kb on + strand, within SM_b20680at 1481.836 kb on + strand, within SM_b20680at 1481.837 kb on - strand, within SM_b20680at 1481.875 kb on + strand, within SM_b20680at 1481.885 kb on - strand, within SM_b20680at 1481.900 kb on + strand, within SM_b20680at 1482.076 kb on - strand, within SM_b20680at 1482.136 kb on + strand, within SM_b20680at 1482.137 kb on - strand, within SM_b20680at 1482.727 kb on + strand, within SM_b20681at 1482.829 kb on + strandat 1482.857 kb on - strand, within SM_b20681at 1482.857 kb on - strand, within SM_b20681at 1482.913 kb on + strand, within SM_b20681at 1482.914 kb on - strand, within SM_b20681at 1483.033 kb on + strand, within SM_b20681at 1483.088 kb on - strand, within SM_b20681at 1483.088 kb on - strand, within SM_b20681at 1483.126 kb on + strand, within SM_b20681at 1483.378 kb on + strand, within SM_b20681at 1483.378 kb on + strand, within SM_b20681

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,480,710 - +1.6
1,481,081 + SM_b20679 0.42 -0.2
1,481,245 - SM_b20679 0.61 +0.5
1,481,246 + SM_b20679 0.61 +1.0
1,481,247 - SM_b20679 0.61 +0.5
1,481,345 + SM_b20679 0.72 -0.0
1,481,345 + SM_b20679 0.72 -0.1
1,481,346 - SM_b20679 0.72 +1.6
1,481,349 - SM_b20679 0.72 -0.9
1,481,391 + SM_b20679 0.77 -3.3
1,481,583 + +0.1
1,481,583 + -0.6
1,481,583 + -0.4
1,481,599 + +0.4
1,481,599 + +0.6
1,481,599 + -0.6
1,481,599 + -0.4
1,481,600 - +0.2
1,481,600 - -1.7
1,481,600 - +0.4
1,481,693 - SM_b20680 0.12 +0.6
1,481,753 - SM_b20680 0.19 +0.4
1,481,753 - SM_b20680 0.19 -1.2
1,481,805 + SM_b20680 0.25 -0.6
1,481,836 + SM_b20680 0.29 -0.6
1,481,837 - SM_b20680 0.29 -1.7
1,481,875 + SM_b20680 0.34 +0.8
1,481,885 - SM_b20680 0.35 -1.0
1,481,900 + SM_b20680 0.37 -0.1
1,482,076 - SM_b20680 0.59 +0.6
1,482,136 + SM_b20680 0.66 -0.2
1,482,137 - SM_b20680 0.66 -0.4
1,482,727 + SM_b20681 0.15 -1.8
1,482,829 + +1.9
1,482,857 - SM_b20681 0.22 -0.3
1,482,857 - SM_b20681 0.22 +0.6
1,482,913 + SM_b20681 0.25 +0.3
1,482,914 - SM_b20681 0.25 -0.3
1,483,033 + SM_b20681 0.32 -2.1
1,483,088 - SM_b20681 0.35 +0.6
1,483,088 - SM_b20681 0.35 -0.1
1,483,126 + SM_b20681 0.37 +0.1
1,483,378 + SM_b20681 0.51 -0.6
1,483,378 + SM_b20681 0.51 +0.6

Or see this region's nucleotide sequence