Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20616

Experiment: Parafilmed volatile agar plate with no fungus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20615 and SM_b20616 are separated by 1 nucleotidesSM_b20616 and SM_b20617 are separated by 196 nucleotidesSM_b20617 and SM_b20618 overlap by 4 nucleotides SM_b20615: SM_b20615 - thiamine biosynthesis protein ThiC, at 1,633,944 to 1,635,779 _b20615 SM_b20616: SM_b20616 - thiamine biosynthesis oxidoreductase, at 1,635,781 to 1,636,758 _b20616 SM_b20617: SM_b20617 - thiazole synthase, at 1,636,955 to 1,637,728 _b20617 SM_b20618: SM_b20618 - thiamine-phosphate pyrophosphorylase, at 1,637,725 to 1,638,330 _b20618 Position (kb) 1635 1636 1637Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1634.896 kb on - strand, within SM_b20615at 1634.897 kb on + strand, within SM_b20615at 1634.898 kb on - strand, within SM_b20615at 1634.994 kb on + strand, within SM_b20615at 1634.995 kb on - strand, within SM_b20615at 1635.012 kb on - strand, within SM_b20615at 1635.033 kb on + strand, within SM_b20615at 1635.033 kb on + strand, within SM_b20615at 1635.033 kb on + strand, within SM_b20615at 1635.194 kb on + strand, within SM_b20615at 1635.194 kb on + strand, within SM_b20615at 1635.195 kb on - strand, within SM_b20615at 1635.255 kb on + strand, within SM_b20615at 1635.257 kb on + strand, within SM_b20615at 1635.257 kb on + strand, within SM_b20615at 1635.360 kb on + strand, within SM_b20615at 1635.361 kb on - strand, within SM_b20615at 1635.735 kb on + strandat 1635.735 kb on + strandat 1635.735 kb on + strandat 1635.736 kb on - strandat 1635.857 kb on + strandat 1635.858 kb on - strandat 1635.858 kb on - strandat 1636.429 kb on + strand, within SM_b20616at 1636.431 kb on + strand, within SM_b20616at 1636.749 kb on + strandat 1636.919 kb on + strandat 1636.967 kb on + strandat 1636.967 kb on + strandat 1637.743 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
remove
1,634,896 - SM_b20615 0.52 -2.0
1,634,897 + SM_b20615 0.52 +2.9
1,634,898 - SM_b20615 0.52 -1.5
1,634,994 + SM_b20615 0.57 -0.1
1,634,995 - SM_b20615 0.57 -1.0
1,635,012 - SM_b20615 0.58 -0.1
1,635,033 + SM_b20615 0.59 -0.6
1,635,033 + SM_b20615 0.59 +0.1
1,635,033 + SM_b20615 0.59 +0.0
1,635,194 + SM_b20615 0.68 -0.3
1,635,194 + SM_b20615 0.68 +0.3
1,635,195 - SM_b20615 0.68 +0.7
1,635,255 + SM_b20615 0.71 +0.8
1,635,257 + SM_b20615 0.72 -0.1
1,635,257 + SM_b20615 0.72 +0.1
1,635,360 + SM_b20615 0.77 -0.5
1,635,361 - SM_b20615 0.77 +0.1
1,635,735 + -0.2
1,635,735 + -1.0
1,635,735 + -0.3
1,635,736 - -0.9
1,635,857 + +1.5
1,635,858 - -2.2
1,635,858 - -1.6
1,636,429 + SM_b20616 0.66 +0.5
1,636,431 + SM_b20616 0.66 +1.5
1,636,749 + -0.8
1,636,919 + +0.2
1,636,967 + +0.7
1,636,967 + +2.7
1,637,743 + +0.0

Or see this region's nucleotide sequence