Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20389 and SM_b20390 are separated by 435 nucleotides SM_b20390 and SM_b20391 overlap by 19 nucleotides
SM_b20389: SM_b20389 - hypothetical protein, at 400,975 to 402,000
_b20389
SM_b20390: SM_b20390 - hypothetical protein, at 402,436 to 403,668
_b20390
SM_b20391: SM_b20391 - cellulose synthase catalytic subunit protein, at 403,650 to 405,644
_b20391
Position (kb) 402
403
404 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 401.643 kb on - strand, within SM_b20389 at 401.690 kb on + strand, within SM_b20389 at 401.690 kb on + strand, within SM_b20389 at 401.690 kb on + strand, within SM_b20389 at 401.690 kb on + strand, within SM_b20389 at 401.690 kb on + strand, within SM_b20389 at 401.691 kb on - strand, within SM_b20389 at 401.691 kb on - strand, within SM_b20389 at 401.691 kb on - strand, within SM_b20389 at 401.691 kb on - strand, within SM_b20389 at 401.691 kb on - strand, within SM_b20389 at 401.770 kb on + strand, within SM_b20389 at 401.770 kb on + strand, within SM_b20389 at 401.770 kb on + strand, within SM_b20389 at 401.770 kb on + strand, within SM_b20389 at 401.770 kb on + strand, within SM_b20389 at 401.770 kb on + strand, within SM_b20389 at 401.771 kb on - strand, within SM_b20389 at 401.771 kb on - strand, within SM_b20389 at 401.862 kb on - strand, within SM_b20389 at 402.005 kb on - strand at 402.005 kb on - strand at 402.081 kb on + strand at 402.112 kb on - strand at 402.119 kb on - strand at 402.217 kb on + strand at 402.234 kb on - strand at 402.238 kb on + strand at 402.238 kb on + strand at 402.323 kb on + strand at 402.372 kb on - strand at 402.399 kb on - strand at 402.399 kb on - strand at 402.462 kb on + strand at 402.462 kb on + strand at 402.463 kb on - strand at 402.527 kb on - strand at 402.527 kb on - strand at 402.548 kb on + strand at 402.549 kb on - strand at 402.569 kb on + strand, within SM_b20390 at 403.053 kb on - strand, within SM_b20390 at 403.087 kb on + strand, within SM_b20390 at 403.087 kb on + strand, within SM_b20390 at 403.087 kb on + strand, within SM_b20390 at 403.212 kb on - strand, within SM_b20390 at 403.367 kb on - strand, within SM_b20390 at 403.379 kb on - strand, within SM_b20390 at 403.666 kb on + strand at 403.788 kb on + strand at 403.788 kb on + strand at 403.788 kb on + strand at 403.789 kb on - strand at 403.926 kb on + strand, within SM_b20391 at 403.926 kb on + strand, within SM_b20391 at 403.926 kb on + strand, within SM_b20391 at 404.022 kb on + strand, within SM_b20391 at 404.023 kb on - strand, within SM_b20391 at 404.023 kb on - strand, within SM_b20391 at 404.025 kb on - strand, within SM_b20391 at 404.103 kb on + strand, within SM_b20391 at 404.103 kb on + strand, within SM_b20391 at 404.103 kb on + strand, within SM_b20391 at 404.104 kb on - strand, within SM_b20391 at 404.104 kb on - strand, within SM_b20391 at 404.269 kb on + strand, within SM_b20391 at 404.274 kb on + strand, within SM_b20391 at 404.274 kb on + strand, within SM_b20391 at 404.275 kb on - strand, within SM_b20391 at 404.395 kb on + strand at 404.396 kb on - strand, within SM_b20391 at 404.396 kb on - strand, within SM_b20391
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 401,643 - SM_b20389 0.65 +1.0 401,690 + SM_b20389 0.70 +0.6 401,690 + SM_b20389 0.70 -1.4 401,690 + SM_b20389 0.70 +0.8 401,690 + SM_b20389 0.70 +3.2 401,690 + SM_b20389 0.70 +0.0 401,691 - SM_b20389 0.70 +0.9 401,691 - SM_b20389 0.70 +0.5 401,691 - SM_b20389 0.70 +0.6 401,691 - SM_b20389 0.70 +0.1 401,691 - SM_b20389 0.70 -0.1 401,770 + SM_b20389 0.77 -0.2 401,770 + SM_b20389 0.77 -2.2 401,770 + SM_b20389 0.77 +0.2 401,770 + SM_b20389 0.77 +1.7 401,770 + SM_b20389 0.77 +0.6 401,770 + SM_b20389 0.77 +0.5 401,771 - SM_b20389 0.78 -0.8 401,771 - SM_b20389 0.78 -0.3 401,862 - SM_b20389 0.86 -0.6 402,005 - +0.1 402,005 - +0.6 402,081 + -0.3 402,112 - -1.0 402,119 - -0.6 402,217 + -0.1 402,234 - -1.6 402,238 + -1.4 402,238 + +0.4 402,323 + -0.7 402,372 - -0.4 402,399 - -2.2 402,399 - +0.4 402,462 + -0.1 402,462 + -2.2 402,463 - -0.1 402,527 - +1.6 402,527 - +0.6 402,548 + +0.8 402,549 - -0.0 402,569 + SM_b20390 0.11 -2.7 403,053 - SM_b20390 0.50 +1.7 403,087 + SM_b20390 0.53 -2.4 403,087 + SM_b20390 0.53 +0.8 403,087 + SM_b20390 0.53 -0.9 403,212 - SM_b20390 0.63 -0.3 403,367 - SM_b20390 0.76 -1.1 403,379 - SM_b20390 0.76 +0.2 403,666 + -0.4 403,788 + -0.4 403,788 + +3.2 403,788 + +1.4 403,789 - +0.3 403,926 + SM_b20391 0.14 +0.7 403,926 + SM_b20391 0.14 +0.6 403,926 + SM_b20391 0.14 +0.1 404,022 + SM_b20391 0.19 -0.8 404,023 - SM_b20391 0.19 -0.6 404,023 - SM_b20391 0.19 -0.5 404,025 - SM_b20391 0.19 +0.9 404,103 + SM_b20391 0.23 +1.1 404,103 + SM_b20391 0.23 +0.1 404,103 + SM_b20391 0.23 +0.0 404,104 - SM_b20391 0.23 -0.8 404,104 - SM_b20391 0.23 -0.4 404,269 + SM_b20391 0.31 -2.4 404,274 + SM_b20391 0.31 -0.4 404,274 + SM_b20391 0.31 +1.9 404,275 - SM_b20391 0.31 +1.5 404,395 + +0.6 404,396 - SM_b20391 0.37 +0.3 404,396 - SM_b20391 0.37 -0.2
Or see this region's nucleotide sequence