Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20335 and SM_b20336 are separated by 49 nucleotides SM_b20336 and SM_b20337 are separated by 57 nucleotides SM_b20337 and SM_b20338 are separated by 97 nucleotides
SM_b20335: SM_b20335 - hypothetical protein, at 340,597 to 341,877
_b20335
SM_b20336: SM_b20336 - hypothetical protein, at 341,927 to 342,718
_b20336
SM_b20337: SM_b20337 - transcriptional regulator, at 342,776 to 343,387
_b20337
SM_b20338: SM_b20338 - efflux protein, at 343,485 to 344,708
_b20338
Position (kb) 341
342
343 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 341.065 kb on + strand, within SM_b20335 at 341.065 kb on + strand, within SM_b20335 at 341.127 kb on + strand, within SM_b20335 at 341.127 kb on + strand, within SM_b20335 at 341.127 kb on + strand, within SM_b20335 at 341.127 kb on + strand, within SM_b20335 at 341.127 kb on + strand, within SM_b20335 at 341.127 kb on + strand, within SM_b20335 at 341.127 kb on + strand, within SM_b20335 at 341.128 kb on - strand, within SM_b20335 at 341.128 kb on - strand, within SM_b20335 at 341.128 kb on - strand, within SM_b20335 at 341.128 kb on - strand, within SM_b20335 at 341.128 kb on - strand, within SM_b20335 at 341.169 kb on + strand, within SM_b20335 at 341.169 kb on + strand, within SM_b20335 at 341.170 kb on - strand, within SM_b20335 at 341.173 kb on + strand, within SM_b20335 at 341.173 kb on + strand, within SM_b20335 at 341.173 kb on + strand, within SM_b20335 at 341.173 kb on + strand, within SM_b20335 at 341.195 kb on - strand, within SM_b20335 at 341.277 kb on + strand, within SM_b20335 at 341.536 kb on + strand, within SM_b20335 at 341.549 kb on + strand, within SM_b20335 at 341.648 kb on + strand, within SM_b20335 at 341.649 kb on - strand, within SM_b20335 at 341.790 kb on - strand at 341.875 kb on + strand at 341.911 kb on - strand at 341.924 kb on - strand at 342.003 kb on + strand at 342.003 kb on + strand at 342.004 kb on - strand at 342.005 kb on + strand at 342.212 kb on + strand, within SM_b20336 at 342.213 kb on - strand, within SM_b20336 at 342.235 kb on - strand, within SM_b20336 at 342.235 kb on - strand, within SM_b20336 at 342.235 kb on - strand, within SM_b20336 at 342.235 kb on - strand, within SM_b20336 at 342.236 kb on + strand, within SM_b20336 at 342.236 kb on + strand, within SM_b20336 at 342.236 kb on + strand, within SM_b20336 at 342.236 kb on + strand, within SM_b20336 at 342.236 kb on + strand, within SM_b20336 at 342.237 kb on - strand, within SM_b20336 at 342.237 kb on - strand, within SM_b20336 at 342.237 kb on - strand, within SM_b20336 at 342.237 kb on - strand, within SM_b20336 at 342.237 kb on - strand, within SM_b20336 at 342.344 kb on + strand, within SM_b20336 at 342.345 kb on - strand at 342.345 kb on - strand, within SM_b20336 at 342.436 kb on + strand, within SM_b20336 at 342.497 kb on + strand, within SM_b20336 at 342.497 kb on + strand, within SM_b20336 at 342.518 kb on + strand, within SM_b20336 at 342.716 kb on + strand at 342.716 kb on + strand at 343.685 kb on - strand, within SM_b20338
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 341,065 + SM_b20335 0.37 -3.2 341,065 + SM_b20335 0.37 -0.4 341,127 + SM_b20335 0.41 -0.2 341,127 + SM_b20335 0.41 +1.1 341,127 + SM_b20335 0.41 +1.0 341,127 + SM_b20335 0.41 +1.6 341,127 + SM_b20335 0.41 +1.3 341,127 + SM_b20335 0.41 +1.3 341,127 + SM_b20335 0.41 -2.2 341,128 - SM_b20335 0.41 +0.8 341,128 - SM_b20335 0.41 -3.1 341,128 - SM_b20335 0.41 +0.6 341,128 - SM_b20335 0.41 -0.3 341,128 - SM_b20335 0.41 +0.2 341,169 + SM_b20335 0.45 +0.6 341,169 + SM_b20335 0.45 +0.0 341,170 - SM_b20335 0.45 -0.1 341,173 + SM_b20335 0.45 -0.4 341,173 + SM_b20335 0.45 +0.9 341,173 + SM_b20335 0.45 +1.3 341,173 + SM_b20335 0.45 -0.5 341,195 - SM_b20335 0.47 -0.6 341,277 + SM_b20335 0.53 +1.5 341,536 + SM_b20335 0.73 +0.2 341,549 + SM_b20335 0.74 +1.0 341,648 + SM_b20335 0.82 +0.5 341,649 - SM_b20335 0.82 -0.1 341,790 - -1.0 341,875 + -0.1 341,911 - +1.6 341,924 - -0.4 342,003 + +0.2 342,003 + -0.9 342,004 - -0.1 342,005 + +0.2 342,212 + SM_b20336 0.36 +0.3 342,213 - SM_b20336 0.36 +0.8 342,235 - SM_b20336 0.39 -0.6 342,235 - SM_b20336 0.39 -0.4 342,235 - SM_b20336 0.39 +0.2 342,235 - SM_b20336 0.39 +0.2 342,236 + SM_b20336 0.39 -0.4 342,236 + SM_b20336 0.39 +0.0 342,236 + SM_b20336 0.39 -0.2 342,236 + SM_b20336 0.39 +0.6 342,236 + SM_b20336 0.39 +0.3 342,237 - SM_b20336 0.39 +0.6 342,237 - SM_b20336 0.39 +1.4 342,237 - SM_b20336 0.39 +2.0 342,237 - SM_b20336 0.39 +0.4 342,237 - SM_b20336 0.39 -2.1 342,344 + SM_b20336 0.53 -0.1 342,345 - +0.1 342,345 - SM_b20336 0.53 -1.5 342,436 + SM_b20336 0.64 +0.7 342,497 + SM_b20336 0.72 +0.1 342,497 + SM_b20336 0.72 +0.1 342,518 + SM_b20336 0.75 -0.1 342,716 + -1.2 342,716 + +0.8 343,685 - SM_b20338 0.16 +0.3
Or see this region's nucleotide sequence