Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20225 and SM_b20226 are separated by 165 nucleotides SM_b20226 and SM_b20227 are separated by 156 nucleotides SM_b20227 and SM_b20228 overlap by 8 nucleotides
SM_b20225: SM_b20225 - osmotically inducible sensory protein, at 231,657 to 232,343
_b20225
SM_b20226: SM_b20226 - hypothetical protein, at 232,509 to 232,682
_b20226
SM_b20227: SM_b20227 - nutrient deprivation-induced protein, at 232,839 to 233,417
_b20227
SM_b20228: SM_b20228 - nutrient deprivation-induced protein, at 233,410 to 233,829
_b20228
Position (kb) 232
233 Strain fitness (log2 ratio) -2
-1
0
1 at 231.612 kb on + strand at 231.850 kb on + strand, within SM_b20225 at 231.926 kb on - strand, within SM_b20225 at 232.075 kb on + strand, within SM_b20225 at 232.093 kb on + strand, within SM_b20225 at 232.093 kb on + strand, within SM_b20225 at 232.094 kb on - strand, within SM_b20225 at 232.123 kb on + strand, within SM_b20225 at 232.162 kb on + strand, within SM_b20225 at 232.162 kb on + strand, within SM_b20225 at 232.162 kb on + strand, within SM_b20225 at 232.163 kb on - strand, within SM_b20225 at 232.264 kb on + strand, within SM_b20225 at 232.264 kb on + strand, within SM_b20225 at 232.265 kb on - strand, within SM_b20225 at 232.502 kb on + strand at 232.503 kb on - strand at 232.521 kb on + strand at 232.522 kb on - strand at 232.559 kb on - strand, within SM_b20226 at 232.650 kb on + strand, within SM_b20226 at 232.778 kb on - strand at 232.919 kb on - strand, within SM_b20227 at 233.406 kb on + strand at 233.406 kb on + strand at 233.406 kb on + strand at 233.406 kb on + strand at 233.407 kb on - strand at 233.407 kb on - strand at 233.415 kb on + strand at 233.469 kb on + strand, within SM_b20228 at 233.469 kb on + strand, within SM_b20228 at 233.469 kb on + strand, within SM_b20228 at 233.471 kb on + strand, within SM_b20228 at 233.471 kb on + strand, within SM_b20228 at 233.472 kb on - strand, within SM_b20228 at 233.472 kb on - strand, within SM_b20228 at 233.617 kb on + strand, within SM_b20228
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 231,612 + -0.3 231,850 + SM_b20225 0.28 +1.5 231,926 - SM_b20225 0.39 -0.4 232,075 + SM_b20225 0.61 +0.4 232,093 + SM_b20225 0.63 +0.1 232,093 + SM_b20225 0.63 +0.3 232,094 - SM_b20225 0.64 -1.4 232,123 + SM_b20225 0.68 +0.5 232,162 + SM_b20225 0.74 -1.8 232,162 + SM_b20225 0.74 -2.0 232,162 + SM_b20225 0.74 +0.2 232,163 - SM_b20225 0.74 +1.1 232,264 + SM_b20225 0.88 +0.4 232,264 + SM_b20225 0.88 +0.9 232,265 - SM_b20225 0.89 -0.1 232,502 + +0.8 232,503 - -0.7 232,521 + -0.1 232,522 - -2.1 232,559 - SM_b20226 0.29 -0.5 232,650 + SM_b20226 0.81 -1.5 232,778 - +0.6 232,919 - SM_b20227 0.14 -1.1 233,406 + -0.9 233,406 + -1.2 233,406 + -0.7 233,406 + -0.2 233,407 - +0.0 233,407 - +1.1 233,415 + +0.2 233,469 + SM_b20228 0.14 +1.2 233,469 + SM_b20228 0.14 -0.8 233,469 + SM_b20228 0.14 -0.1 233,471 + SM_b20228 0.15 -0.0 233,471 + SM_b20228 0.15 -0.7 233,472 - SM_b20228 0.15 +0.2 233,472 - SM_b20228 0.15 +1.6 233,617 + SM_b20228 0.49 -0.5
Or see this region's nucleotide sequence