Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20208 and SM_b20209 are separated by 68 nucleotides SM_b20209 and SM_b20210 are separated by 54 nucleotides SM_b20210 and SM_b20211 are separated by 141 nucleotides
SM_b20208: SM_b20208 - pyrroloquinoline quinone biosynthesis protein PqqE, at 215,797 to 216,924
_b20208
SM_b20209: SM_b20209 - hypothetical protein, at 216,993 to 217,232
_b20209
SM_b20210: SM_b20210 - oxidoreductase, at 217,287 to 218,000
_b20210
SM_b20211: SM_b20211 - transcriptional regulator, at 218,142 to 219,074
_b20211
Position (kb) 217
218
219 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 216.425 kb on + strand, within SM_b20208 at 216.425 kb on + strand, within SM_b20208 at 216.426 kb on - strand, within SM_b20208 at 216.498 kb on - strand, within SM_b20208 at 216.512 kb on - strand, within SM_b20208 at 216.538 kb on + strand, within SM_b20208 at 217.061 kb on + strand, within SM_b20209 at 217.090 kb on + strand, within SM_b20209 at 217.090 kb on + strand, within SM_b20209 at 217.215 kb on + strand at 217.215 kb on + strand at 217.216 kb on - strand at 217.227 kb on - strand at 217.279 kb on + strand at 217.279 kb on + strand at 217.279 kb on + strand at 217.465 kb on - strand, within SM_b20210 at 217.623 kb on - strand, within SM_b20210 at 217.860 kb on + strand, within SM_b20210 at 218.322 kb on + strand, within SM_b20211 at 218.322 kb on + strand, within SM_b20211 at 218.322 kb on + strand, within SM_b20211 at 218.322 kb on + strand, within SM_b20211 at 218.323 kb on - strand, within SM_b20211 at 218.323 kb on - strand, within SM_b20211 at 218.326 kb on + strand, within SM_b20211 at 218.326 kb on + strand, within SM_b20211 at 218.327 kb on - strand, within SM_b20211 at 218.327 kb on - strand, within SM_b20211 at 218.341 kb on + strand, within SM_b20211 at 218.347 kb on + strand, within SM_b20211 at 218.348 kb on - strand, within SM_b20211 at 218.757 kb on + strand, within SM_b20211 at 218.757 kb on + strand, within SM_b20211 at 218.758 kb on - strand, within SM_b20211 at 218.758 kb on - strand, within SM_b20211 at 218.758 kb on - strand, within SM_b20211 at 218.881 kb on + strand, within SM_b20211 at 218.882 kb on - strand, within SM_b20211
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 216,425 + SM_b20208 0.56 +1.0 216,425 + SM_b20208 0.56 -1.5 216,426 - SM_b20208 0.56 -1.9 216,498 - SM_b20208 0.62 -0.9 216,512 - SM_b20208 0.63 +3.0 216,538 + SM_b20208 0.66 +0.0 217,061 + SM_b20209 0.28 -1.2 217,090 + SM_b20209 0.40 -3.0 217,090 + SM_b20209 0.40 +0.0 217,215 + -0.3 217,215 + +0.5 217,216 - +0.3 217,227 - +1.2 217,279 + -0.9 217,279 + +0.6 217,279 + +1.1 217,465 - SM_b20210 0.25 +0.4 217,623 - SM_b20210 0.47 -0.5 217,860 + SM_b20210 0.80 -1.6 218,322 + SM_b20211 0.19 -1.1 218,322 + SM_b20211 0.19 -0.6 218,322 + SM_b20211 0.19 +0.6 218,322 + SM_b20211 0.19 -0.3 218,323 - SM_b20211 0.19 -3.7 218,323 - SM_b20211 0.19 -1.6 218,326 + SM_b20211 0.20 -0.2 218,326 + SM_b20211 0.20 -0.7 218,327 - SM_b20211 0.20 -0.1 218,327 - SM_b20211 0.20 -0.4 218,341 + SM_b20211 0.21 -0.8 218,347 + SM_b20211 0.22 -1.1 218,348 - SM_b20211 0.22 -0.8 218,757 + SM_b20211 0.66 +1.1 218,757 + SM_b20211 0.66 +0.4 218,758 - SM_b20211 0.66 +0.5 218,758 - SM_b20211 0.66 +1.1 218,758 - SM_b20211 0.66 -0.1 218,881 + SM_b20211 0.79 +0.6 218,882 - SM_b20211 0.79 -0.5
Or see this region's nucleotide sequence