Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20123

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b22004 and SM_b20121 overlap by 56 nucleotidesSM_b20121 and SM_b20122 are separated by 181 nucleotidesSM_b20122 and SM_b20123 are separated by 185 nucleotidesSM_b20123 and SM_b20124 are separated by 121 nucleotides SM_b22004: SM_b22004 - plasmid stabilization system protein, at 132,946 to 133,338 _b22004 SM_b20121: SM_b20121 - hypothetical protein, at 133,283 to 133,558 _b20121 SM_b20122: SM_b20122 - hypothetical protein, at 133,740 to 134,075 _b20122 SM_b20123: SM_b20123 - transcriptional regulator, at 134,261 to 135,157 _b20123 SM_b20124: SM_b20124 - sugar ABC transporter ATP-binding protein, at 135,279 to 136,805 _b20124 Position (kb) 134 135 136Strain fitness (log2 ratio) -3 -2 -1 0 1at 133.368 kb on - strand, within SM_b20121at 133.476 kb on + strand, within SM_b20121at 133.609 kb on - strandat 133.610 kb on + strandat 133.654 kb on + strandat 133.654 kb on + strandat 133.654 kb on + strandat 133.689 kb on + strandat 133.689 kb on + strandat 133.702 kb on + strandat 133.723 kb on - strandat 133.723 kb on - strandat 133.830 kb on - strand, within SM_b20122at 133.885 kb on + strand, within SM_b20122at 133.885 kb on + strand, within SM_b20122at 133.885 kb on + strand, within SM_b20122at 133.886 kb on - strand, within SM_b20122at 133.930 kb on - strand, within SM_b20122at 134.034 kb on + strand, within SM_b20122at 134.034 kb on + strand, within SM_b20122at 134.034 kb on + strand, within SM_b20122at 134.034 kb on + strand, within SM_b20122at 134.034 kb on + strand, within SM_b20122at 134.035 kb on - strand, within SM_b20122at 134.035 kb on - strand, within SM_b20122at 134.035 kb on - strand, within SM_b20122at 134.092 kb on + strandat 134.097 kb on + strandat 134.496 kb on + strand, within SM_b20123at 134.497 kb on - strand, within SM_b20123at 134.793 kb on - strand, within SM_b20123at 134.793 kb on - strand, within SM_b20123at 134.922 kb on - strand, within SM_b20123at 135.070 kb on + strandat 135.098 kb on + strandat 135.162 kb on - strandat 135.253 kb on - strandat 135.376 kb on + strandat 135.376 kb on + strandat 135.376 kb on + strandat 135.377 kb on - strandat 135.377 kb on - strandat 135.377 kb on - strandat 135.516 kb on - strand, within SM_b20124at 135.792 kb on - strand, within SM_b20124at 135.821 kb on - strand, within SM_b20124at 135.972 kb on + strand, within SM_b20124at 135.972 kb on + strand, within SM_b20124at 135.973 kb on - strandat 135.973 kb on - strand, within SM_b20124at 136.069 kb on + strand, within SM_b20124at 136.070 kb on - strand, within SM_b20124at 136.140 kb on - strand, within SM_b20124

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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133,368 - SM_b20121 0.31 -0.2
133,476 + SM_b20121 0.70 +0.6
133,609 - -1.7
133,610 + -2.2
133,654 + -2.7
133,654 + -0.1
133,654 + +0.1
133,689 + -2.0
133,689 + +0.1
133,702 + +0.1
133,723 - -0.7
133,723 - -2.8
133,830 - SM_b20122 0.27 -1.3
133,885 + SM_b20122 0.43 -0.8
133,885 + SM_b20122 0.43 +0.1
133,885 + SM_b20122 0.43 -0.3
133,886 - SM_b20122 0.43 +0.2
133,930 - SM_b20122 0.57 -2.0
134,034 + SM_b20122 0.88 -0.7
134,034 + SM_b20122 0.88 -0.2
134,034 + SM_b20122 0.88 -0.0
134,034 + SM_b20122 0.88 -0.3
134,034 + SM_b20122 0.88 -1.8
134,035 - SM_b20122 0.88 +0.1
134,035 - SM_b20122 0.88 -0.5
134,035 - SM_b20122 0.88 +0.5
134,092 + -2.8
134,097 + -0.3
134,496 + SM_b20123 0.26 -1.2
134,497 - SM_b20123 0.26 -1.4
134,793 - SM_b20123 0.59 -2.3
134,793 - SM_b20123 0.59 -0.5
134,922 - SM_b20123 0.74 +0.0
135,070 + -1.1
135,098 + -1.0
135,162 - -0.3
135,253 - +1.1
135,376 + +0.3
135,376 + -0.4
135,376 + +0.2
135,377 - -3.1
135,377 - -1.4
135,377 - -1.5
135,516 - SM_b20124 0.16 +0.7
135,792 - SM_b20124 0.34 -1.4
135,821 - SM_b20124 0.35 -0.1
135,972 + SM_b20124 0.45 +0.4
135,972 + SM_b20124 0.45 +0.4
135,973 - +0.6
135,973 - SM_b20124 0.45 +0.2
136,069 + SM_b20124 0.52 -0.1
136,070 - SM_b20124 0.52 -1.5
136,140 - SM_b20124 0.56 -0.1

Or see this region's nucleotide sequence