Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20044

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20043 and SM_b20044 are separated by 460 nucleotidesSM_b20044 and SM_b20045 are separated by 155 nucleotides SM_b20043: SM_b20043 - hypothetical protein, at 53,787 to 54,629 _b20043 SM_b20044: SM_b20044 - replication initiation protein RepC, at 55,090 to 56,400 _b20044 SM_b20045: SM_b20045 - replication protein B, at 56,556 to 57,560 _b20045 Position (kb) 55 56 57Strain fitness (log2 ratio) -2 -1 0 1 2 3at 54.177 kb on - strand, within SM_b20043at 54.208 kb on + strand, within SM_b20043at 54.232 kb on + strand, within SM_b20043at 54.232 kb on + strand, within SM_b20043at 54.286 kb on - strand, within SM_b20043at 54.400 kb on - strand, within SM_b20043at 54.400 kb on - strand, within SM_b20043at 54.400 kb on - strand, within SM_b20043at 54.440 kb on + strand, within SM_b20043at 54.476 kb on - strand, within SM_b20043at 54.525 kb on - strand, within SM_b20043at 54.585 kb on + strandat 54.586 kb on - strandat 54.588 kb on - strandat 54.643 kb on - strandat 54.775 kb on + strandat 54.971 kb on - strandat 55.066 kb on + strandat 55.066 kb on + strandat 55.066 kb on + strandat 56.558 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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54,177 - SM_b20043 0.46 +2.1
54,208 + SM_b20043 0.50 +1.9
54,232 + SM_b20043 0.53 +0.8
54,232 + SM_b20043 0.53 +2.9
54,286 - SM_b20043 0.59 +0.7
54,400 - SM_b20043 0.73 +1.1
54,400 - SM_b20043 0.73 +1.1
54,400 - SM_b20043 0.73 +2.1
54,440 + SM_b20043 0.77 +1.8
54,476 - SM_b20043 0.82 +1.2
54,525 - SM_b20043 0.88 +1.8
54,585 + +2.0
54,586 - +1.2
54,588 - +1.8
54,643 - +0.6
54,775 + +1.6
54,971 - -0.5
55,066 + -0.3
55,066 + -0.2
55,066 + -1.5
56,558 - -2.3

Or see this region's nucleotide sequence