Experiment: Cobalt chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_6069 and Pf6N2E2_6070 overlap by 4 nucleotides Pf6N2E2_6070 and Pf6N2E2_6071 overlap by 4 nucleotides Pf6N2E2_6071 and Pf6N2E2_6072 overlap by 4 nucleotides Pf6N2E2_6072 and Pf6N2E2_6073 are separated by 235 nucleotides Pf6N2E2_6073 and Pf6N2E2_6074 are separated by 106 nucleotides
Pf6N2E2_6069 - FIG049111: Hypothetical protein in pyoverdin gene cluster, at 6,890,763 to 6,891,338
_6069
Pf6N2E2_6070 - FIG137877: Hypothetical protein in pyoverdin gene cluster, at 6,891,335 to 6,891,661
_6070
Pf6N2E2_6071 - FIG139991: Putative thiamine pyrophosphate-requiring enzyme, at 6,891,658 to 6,892,200
_6071
Pf6N2E2_6072 - FIG137594: Putative iron-regulated membrane protein, at 6,892,197 to 6,893,411
_6072
Pf6N2E2_6073 - PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein, at 6,893,647 to 6,894,108
_6073
Pf6N2E2_6074 - Redox-sensitive transcriptional activator SoxR, at 6,894,215 to 6,894,667
_6074
Position (kb)
6892
6893
6894 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 6891.280 kb on + strand, within Pf6N2E2_6069 at 6891.280 kb on + strand, within Pf6N2E2_6069 at 6891.280 kb on + strand, within Pf6N2E2_6069 at 6891.280 kb on + strand, within Pf6N2E2_6069 at 6891.280 kb on + strand, within Pf6N2E2_6069 at 6891.281 kb on - strand at 6891.281 kb on - strand at 6891.402 kb on + strand, within Pf6N2E2_6070 at 6891.402 kb on + strand, within Pf6N2E2_6070 at 6891.403 kb on - strand, within Pf6N2E2_6070 at 6891.403 kb on - strand, within Pf6N2E2_6070 at 6891.403 kb on - strand, within Pf6N2E2_6070 at 6891.888 kb on - strand, within Pf6N2E2_6071 at 6891.888 kb on - strand, within Pf6N2E2_6071 at 6891.888 kb on - strand, within Pf6N2E2_6071 at 6891.910 kb on - strand, within Pf6N2E2_6071 at 6892.085 kb on + strand, within Pf6N2E2_6071 at 6892.085 kb on + strand, within Pf6N2E2_6071 at 6892.086 kb on - strand, within Pf6N2E2_6071 at 6892.498 kb on + strand, within Pf6N2E2_6072 at 6892.522 kb on + strand, within Pf6N2E2_6072 at 6892.522 kb on + strand, within Pf6N2E2_6072 at 6892.522 kb on + strand, within Pf6N2E2_6072 at 6892.523 kb on - strand, within Pf6N2E2_6072 at 6892.567 kb on + strand, within Pf6N2E2_6072 at 6892.817 kb on + strand, within Pf6N2E2_6072 at 6892.818 kb on - strand, within Pf6N2E2_6072 at 6892.909 kb on + strand, within Pf6N2E2_6072 at 6892.909 kb on + strand, within Pf6N2E2_6072 at 6892.909 kb on + strand, within Pf6N2E2_6072 at 6892.909 kb on + strand, within Pf6N2E2_6072 at 6892.910 kb on - strand, within Pf6N2E2_6072 at 6892.969 kb on + strand, within Pf6N2E2_6072 at 6892.984 kb on + strand, within Pf6N2E2_6072 at 6892.984 kb on + strand, within Pf6N2E2_6072 at 6892.984 kb on + strand, within Pf6N2E2_6072 at 6892.985 kb on - strand, within Pf6N2E2_6072 at 6893.080 kb on + strand, within Pf6N2E2_6072 at 6893.092 kb on + strand, within Pf6N2E2_6072 at 6893.092 kb on + strand, within Pf6N2E2_6072 at 6893.092 kb on + strand, within Pf6N2E2_6072 at 6893.092 kb on + strand, within Pf6N2E2_6072 at 6893.092 kb on + strand, within Pf6N2E2_6072 at 6893.224 kb on + strand, within Pf6N2E2_6072 at 6893.224 kb on + strand, within Pf6N2E2_6072 at 6893.224 kb on + strand, within Pf6N2E2_6072 at 6893.224 kb on + strand, within Pf6N2E2_6072 at 6893.225 kb on - strand, within Pf6N2E2_6072 at 6893.225 kb on - strand, within Pf6N2E2_6072 at 6893.369 kb on + strand at 6893.369 kb on + strand at 6893.369 kb on + strand at 6893.369 kb on + strand at 6893.369 kb on + strand at 6893.370 kb on - strand at 6893.370 kb on - strand at 6893.370 kb on - strand at 6893.370 kb on - strand at 6893.444 kb on + strand at 6893.473 kb on + strand at 6893.473 kb on + strand at 6893.474 kb on - strand at 6893.507 kb on + strand at 6893.508 kb on - strand at 6893.516 kb on + strand at 6893.516 kb on + strand at 6893.516 kb on + strand at 6893.516 kb on + strand at 6893.517 kb on - strand at 6893.517 kb on - strand at 6893.517 kb on - strand at 6893.517 kb on - strand at 6893.520 kb on + strand at 6893.855 kb on + strand, within Pf6N2E2_6073 at 6893.855 kb on + strand, within Pf6N2E2_6073 at 6893.855 kb on + strand, within Pf6N2E2_6073 at 6893.855 kb on + strand, within Pf6N2E2_6073 at 6893.855 kb on + strand, within Pf6N2E2_6073 at 6893.856 kb on - strand, within Pf6N2E2_6073 at 6893.856 kb on - strand, within Pf6N2E2_6073 at 6893.856 kb on - strand, within Pf6N2E2_6073 at 6893.856 kb on - strand, within Pf6N2E2_6073 at 6893.856 kb on - strand, within Pf6N2E2_6073 at 6893.856 kb on - strand, within Pf6N2E2_6073 at 6893.856 kb on - strand, within Pf6N2E2_6073 at 6893.856 kb on - strand, within Pf6N2E2_6073 at 6893.857 kb on + strand, within Pf6N2E2_6073 at 6893.857 kb on + strand, within Pf6N2E2_6073 at 6893.857 kb on + strand, within Pf6N2E2_6073 at 6893.857 kb on + strand, within Pf6N2E2_6073 at 6893.857 kb on + strand, within Pf6N2E2_6073 at 6893.857 kb on + strand, within Pf6N2E2_6073 at 6893.857 kb on + strand, within Pf6N2E2_6073 at 6893.857 kb on + strand, within Pf6N2E2_6073 at 6893.857 kb on + strand, within Pf6N2E2_6073 at 6893.858 kb on - strand, within Pf6N2E2_6073 at 6893.858 kb on - strand, within Pf6N2E2_6073 at 6893.858 kb on - strand, within Pf6N2E2_6073 at 6893.858 kb on - strand, within Pf6N2E2_6073 at 6893.858 kb on - strand, within Pf6N2E2_6073 at 6893.858 kb on - strand, within Pf6N2E2_6073 at 6893.858 kb on - strand, within Pf6N2E2_6073 at 6893.858 kb on - strand, within Pf6N2E2_6073 at 6893.858 kb on - strand, within Pf6N2E2_6073 at 6893.858 kb on - strand, within Pf6N2E2_6073 at 6893.858 kb on - strand, within Pf6N2E2_6073 at 6894.023 kb on + strand, within Pf6N2E2_6073 at 6894.062 kb on + strand at 6894.063 kb on - strand at 6894.171 kb on + strand at 6894.171 kb on + strand at 6894.172 kb on - strand at 6894.173 kb on + strand at 6894.173 kb on + strand at 6894.173 kb on + strand at 6894.174 kb on - strand at 6894.174 kb on - strand at 6894.174 kb on - strand at 6894.174 kb on - strand at 6894.174 kb on - strand at 6894.174 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM remove 6,891,280 + Pf6N2E2_6069 0.90 +0.3 6,891,280 + Pf6N2E2_6069 0.90 -0.1 6,891,280 + Pf6N2E2_6069 0.90 -0.4 6,891,280 + Pf6N2E2_6069 0.90 -0.5 6,891,280 + Pf6N2E2_6069 0.90 -0.7 6,891,281 - +0.5 6,891,281 - +0.4 6,891,402 + Pf6N2E2_6070 0.20 -2.1 6,891,402 + Pf6N2E2_6070 0.20 +0.8 6,891,403 - Pf6N2E2_6070 0.21 -1.0 6,891,403 - Pf6N2E2_6070 0.21 -0.9 6,891,403 - Pf6N2E2_6070 0.21 +0.3 6,891,888 - Pf6N2E2_6071 0.42 -2.8 6,891,888 - Pf6N2E2_6071 0.42 -2.5 6,891,888 - Pf6N2E2_6071 0.42 -2.5 6,891,910 - Pf6N2E2_6071 0.46 -0.0 6,892,085 + Pf6N2E2_6071 0.79 +0.4 6,892,085 + Pf6N2E2_6071 0.79 -1.0 6,892,086 - Pf6N2E2_6071 0.79 +0.1 6,892,498 + Pf6N2E2_6072 0.25 -0.0 6,892,522 + Pf6N2E2_6072 0.27 +0.3 6,892,522 + Pf6N2E2_6072 0.27 +0.8 6,892,522 + Pf6N2E2_6072 0.27 +1.2 6,892,523 - Pf6N2E2_6072 0.27 +0.8 6,892,567 + Pf6N2E2_6072 0.30 -0.2 6,892,817 + Pf6N2E2_6072 0.51 +0.3 6,892,818 - Pf6N2E2_6072 0.51 +1.6 6,892,909 + Pf6N2E2_6072 0.59 -1.0 6,892,909 + Pf6N2E2_6072 0.59 -0.1 6,892,909 + Pf6N2E2_6072 0.59 +0.9 6,892,909 + Pf6N2E2_6072 0.59 -0.2 6,892,910 - Pf6N2E2_6072 0.59 -0.4 6,892,969 + Pf6N2E2_6072 0.64 +0.3 6,892,984 + Pf6N2E2_6072 0.65 +2.2 6,892,984 + Pf6N2E2_6072 0.65 +1.6 6,892,984 + Pf6N2E2_6072 0.65 +0.6 6,892,985 - Pf6N2E2_6072 0.65 -1.0 6,893,080 + Pf6N2E2_6072 0.73 -0.0 6,893,092 + Pf6N2E2_6072 0.74 +0.7 6,893,092 + Pf6N2E2_6072 0.74 +0.8 6,893,092 + Pf6N2E2_6072 0.74 +0.5 6,893,092 + Pf6N2E2_6072 0.74 +1.3 6,893,092 + Pf6N2E2_6072 0.74 +1.8 6,893,224 + Pf6N2E2_6072 0.85 +1.0 6,893,224 + Pf6N2E2_6072 0.85 +1.0 6,893,224 + Pf6N2E2_6072 0.85 +0.5 6,893,224 + Pf6N2E2_6072 0.85 +0.1 6,893,225 - Pf6N2E2_6072 0.85 -0.0 6,893,225 - Pf6N2E2_6072 0.85 +0.3 6,893,369 + +0.5 6,893,369 + -0.2 6,893,369 + +0.8 6,893,369 + +1.0 6,893,369 + +0.4 6,893,370 - -0.4 6,893,370 - +2.0 6,893,370 - -0.0 6,893,370 - +0.8 6,893,444 + +0.1 6,893,473 + +0.1 6,893,473 + -0.5 6,893,474 - -3.8 6,893,507 + -2.9 6,893,508 - -0.0 6,893,516 + +0.6 6,893,516 + -2.7 6,893,516 + +0.5 6,893,516 + +0.6 6,893,517 - -1.6 6,893,517 - -2.3 6,893,517 - -1.8 6,893,517 - -0.6 6,893,520 + -0.8 6,893,855 + Pf6N2E2_6073 0.45 +0.1 6,893,855 + Pf6N2E2_6073 0.45 -0.0 6,893,855 + Pf6N2E2_6073 0.45 -0.3 6,893,855 + Pf6N2E2_6073 0.45 -0.0 6,893,855 + Pf6N2E2_6073 0.45 -0.6 6,893,856 - Pf6N2E2_6073 0.45 -1.1 6,893,856 - Pf6N2E2_6073 0.45 +0.4 6,893,856 - Pf6N2E2_6073 0.45 -0.0 6,893,856 - Pf6N2E2_6073 0.45 -0.1 6,893,856 - Pf6N2E2_6073 0.45 -0.5 6,893,856 - Pf6N2E2_6073 0.45 +0.4 6,893,856 - Pf6N2E2_6073 0.45 -0.6 6,893,856 - Pf6N2E2_6073 0.45 -0.6 6,893,857 + Pf6N2E2_6073 0.45 +1.0 6,893,857 + Pf6N2E2_6073 0.45 -1.2 6,893,857 + Pf6N2E2_6073 0.45 -1.2 6,893,857 + Pf6N2E2_6073 0.45 -0.5 6,893,857 + Pf6N2E2_6073 0.45 +2.0 6,893,857 + Pf6N2E2_6073 0.45 -0.2 6,893,857 + Pf6N2E2_6073 0.45 -1.3 6,893,857 + Pf6N2E2_6073 0.45 -0.6 6,893,857 + Pf6N2E2_6073 0.45 +1.0 6,893,858 - Pf6N2E2_6073 0.46 -0.7 6,893,858 - Pf6N2E2_6073 0.46 -1.0 6,893,858 - Pf6N2E2_6073 0.46 +0.1 6,893,858 - Pf6N2E2_6073 0.46 -0.0 6,893,858 - Pf6N2E2_6073 0.46 -1.2 6,893,858 - Pf6N2E2_6073 0.46 +0.6 6,893,858 - Pf6N2E2_6073 0.46 +0.4 6,893,858 - Pf6N2E2_6073 0.46 -0.2 6,893,858 - Pf6N2E2_6073 0.46 -1.2 6,893,858 - Pf6N2E2_6073 0.46 +1.0 6,893,858 - Pf6N2E2_6073 0.46 -0.5 6,894,023 + Pf6N2E2_6073 0.81 -2.5 6,894,062 + -0.3 6,894,063 - -1.0 6,894,171 + +0.3 6,894,171 + -0.4 6,894,172 - +0.6 6,894,173 + -0.0 6,894,173 + +0.1 6,894,173 + -1.8 6,894,174 - -1.5 6,894,174 - +1.0 6,894,174 - -1.0 6,894,174 - +1.0 6,894,174 - +0.7 6,894,174 - -0.3
Or see this region's nucleotide sequence