Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5743

Experiment: Cobalt chloride 0.6 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_5742 and Pf6N2E2_5743 are separated by 35 nucleotidesPf6N2E2_5743 and Pf6N2E2_5744 overlap by 4 nucleotides Pf6N2E2_5742 - Cobyric acid synthase (EC 6.3.5.10), at 6,558,721 to 6,560,172 _5742 Pf6N2E2_5743 - Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62), at 6,560,208 to 6,560,729 _5743 Pf6N2E2_5744 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21), at 6,560,726 to 6,561,781 _5744 Position (kb) 6560 6561Strain fitness (log2 ratio) -1 0 1 2at 6559.230 kb on - strand, within Pf6N2E2_5742at 6559.393 kb on + strand, within Pf6N2E2_5742at 6559.633 kb on + strand, within Pf6N2E2_5742at 6559.633 kb on + strand, within Pf6N2E2_5742at 6559.633 kb on + strand, within Pf6N2E2_5742at 6559.933 kb on + strand, within Pf6N2E2_5742at 6559.934 kb on - strand, within Pf6N2E2_5742at 6559.993 kb on + strand, within Pf6N2E2_5742at 6559.993 kb on + strand, within Pf6N2E2_5742at 6559.993 kb on + strand, within Pf6N2E2_5742at 6559.993 kb on + strand, within Pf6N2E2_5742at 6559.993 kb on + strand, within Pf6N2E2_5742at 6559.994 kb on - strand, within Pf6N2E2_5742at 6559.994 kb on - strand, within Pf6N2E2_5742at 6559.994 kb on - strand, within Pf6N2E2_5742at 6559.994 kb on - strand, within Pf6N2E2_5742at 6559.994 kb on - strand, within Pf6N2E2_5742at 6560.077 kb on + strandat 6560.078 kb on - strandat 6560.295 kb on + strand, within Pf6N2E2_5743at 6560.295 kb on + strand, within Pf6N2E2_5743at 6560.295 kb on + strand, within Pf6N2E2_5743at 6560.295 kb on + strand, within Pf6N2E2_5743at 6560.295 kb on + strand, within Pf6N2E2_5743at 6560.296 kb on - strand, within Pf6N2E2_5743at 6560.296 kb on - strand, within Pf6N2E2_5743at 6560.296 kb on - strand, within Pf6N2E2_5743at 6560.296 kb on - strand, within Pf6N2E2_5743at 6560.296 kb on - strand, within Pf6N2E2_5743at 6560.296 kb on - strand, within Pf6N2E2_5743at 6560.296 kb on - strand, within Pf6N2E2_5743at 6560.296 kb on - strand, within Pf6N2E2_5743at 6560.296 kb on - strand, within Pf6N2E2_5743at 6560.622 kb on + strand, within Pf6N2E2_5743at 6560.717 kb on + strandat 6560.725 kb on + strandat 6561.474 kb on - strand, within Pf6N2E2_5744

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM
remove
6,559,230 - Pf6N2E2_5742 0.35 +1.3
6,559,393 + Pf6N2E2_5742 0.46 -1.5
6,559,633 + Pf6N2E2_5742 0.63 +0.1
6,559,633 + Pf6N2E2_5742 0.63 -0.9
6,559,633 + Pf6N2E2_5742 0.63 -1.5
6,559,933 + Pf6N2E2_5742 0.83 +0.3
6,559,934 - Pf6N2E2_5742 0.84 -0.5
6,559,993 + Pf6N2E2_5742 0.88 -0.5
6,559,993 + Pf6N2E2_5742 0.88 -0.5
6,559,993 + Pf6N2E2_5742 0.88 +0.8
6,559,993 + Pf6N2E2_5742 0.88 +0.5
6,559,993 + Pf6N2E2_5742 0.88 -0.5
6,559,994 - Pf6N2E2_5742 0.88 +1.1
6,559,994 - Pf6N2E2_5742 0.88 +1.1
6,559,994 - Pf6N2E2_5742 0.88 +2.1
6,559,994 - Pf6N2E2_5742 0.88 +0.1
6,559,994 - Pf6N2E2_5742 0.88 +1.1
6,560,077 + +0.1
6,560,078 - -0.9
6,560,295 + Pf6N2E2_5743 0.17 +1.1
6,560,295 + Pf6N2E2_5743 0.17 +0.1
6,560,295 + Pf6N2E2_5743 0.17 -0.9
6,560,295 + Pf6N2E2_5743 0.17 -0.5
6,560,295 + Pf6N2E2_5743 0.17 -1.5
6,560,296 - Pf6N2E2_5743 0.17 -1.3
6,560,296 - Pf6N2E2_5743 0.17 -0.9
6,560,296 - Pf6N2E2_5743 0.17 +0.9
6,560,296 - Pf6N2E2_5743 0.17 -0.3
6,560,296 - Pf6N2E2_5743 0.17 -1.3
6,560,296 - Pf6N2E2_5743 0.17 -0.2
6,560,296 - Pf6N2E2_5743 0.17 -0.8
6,560,296 - Pf6N2E2_5743 0.17 +1.1
6,560,296 - Pf6N2E2_5743 0.17 -1.7
6,560,622 + Pf6N2E2_5743 0.79 -0.9
6,560,717 + +0.2
6,560,725 + +2.1
6,561,474 - Pf6N2E2_5744 0.71 +1.6

Or see this region's nucleotide sequence