Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5687

Experiment: Cobalt chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5686 and Pf6N2E2_5687 are separated by 70 nucleotidesPf6N2E2_5687 and Pf6N2E2_5688 are separated by 62 nucleotidesPf6N2E2_5688 and Pf6N2E2_5689 are separated by 92 nucleotides Pf6N2E2_5686 - glutamine synthetase family protein, at 6,500,051 to 6,501,394 _5686 Pf6N2E2_5687 - Transporter, MFS superfamily, at 6,501,465 to 6,502,832 _5687 Pf6N2E2_5688 - FIG00955605: hypothetical protein, at 6,502,895 to 6,503,641 _5688 Pf6N2E2_5689 - Flagellar biosynthesis protein FlgN, at 6,503,734 to 6,504,201 _5689 Position (kb) 6501 6502 6503Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6500.600 kb on + strand, within Pf6N2E2_5686at 6500.600 kb on + strand, within Pf6N2E2_5686at 6500.600 kb on + strand, within Pf6N2E2_5686at 6500.600 kb on + strand, within Pf6N2E2_5686at 6500.600 kb on + strand, within Pf6N2E2_5686at 6500.600 kb on + strand, within Pf6N2E2_5686at 6500.600 kb on + strand, within Pf6N2E2_5686at 6500.601 kb on - strand, within Pf6N2E2_5686at 6500.601 kb on - strand, within Pf6N2E2_5686at 6500.635 kb on + strand, within Pf6N2E2_5686at 6500.635 kb on + strand, within Pf6N2E2_5686at 6500.659 kb on - strand, within Pf6N2E2_5686at 6500.659 kb on - strand, within Pf6N2E2_5686at 6500.854 kb on + strand, within Pf6N2E2_5686at 6501.229 kb on + strand, within Pf6N2E2_5686at 6501.229 kb on + strand, within Pf6N2E2_5686at 6501.229 kb on + strand, within Pf6N2E2_5686at 6501.229 kb on + strand, within Pf6N2E2_5686at 6501.229 kb on + strand, within Pf6N2E2_5686at 6501.230 kb on - strand, within Pf6N2E2_5686at 6501.230 kb on - strand, within Pf6N2E2_5686at 6501.230 kb on - strand, within Pf6N2E2_5686at 6501.230 kb on - strand, within Pf6N2E2_5686at 6501.230 kb on - strand, within Pf6N2E2_5686at 6501.230 kb on - strand, within Pf6N2E2_5686at 6501.262 kb on + strandat 6501.263 kb on - strandat 6501.308 kb on + strandat 6501.309 kb on - strandat 6501.309 kb on - strandat 6501.309 kb on - strandat 6501.435 kb on - strandat 6501.498 kb on + strandat 6501.499 kb on - strandat 6501.499 kb on - strandat 6501.542 kb on + strandat 6501.542 kb on + strandat 6501.543 kb on - strandat 6501.543 kb on - strandat 6501.543 kb on - strandat 6501.543 kb on - strandat 6501.546 kb on + strandat 6501.546 kb on + strandat 6501.546 kb on + strandat 6501.546 kb on + strandat 6501.547 kb on - strandat 6501.547 kb on - strandat 6501.547 kb on - strandat 6501.547 kb on - strandat 6501.547 kb on - strandat 6501.615 kb on + strand, within Pf6N2E2_5687at 6501.616 kb on - strand, within Pf6N2E2_5687at 6501.685 kb on - strand, within Pf6N2E2_5687at 6501.798 kb on + strand, within Pf6N2E2_5687at 6501.799 kb on - strand, within Pf6N2E2_5687at 6501.799 kb on - strand, within Pf6N2E2_5687at 6501.799 kb on - strand, within Pf6N2E2_5687at 6501.867 kb on + strand, within Pf6N2E2_5687at 6501.867 kb on + strand, within Pf6N2E2_5687at 6501.867 kb on + strand, within Pf6N2E2_5687at 6501.868 kb on - strand, within Pf6N2E2_5687at 6501.868 kb on - strand, within Pf6N2E2_5687at 6501.869 kb on + strand, within Pf6N2E2_5687at 6501.869 kb on + strand, within Pf6N2E2_5687at 6501.869 kb on + strand, within Pf6N2E2_5687at 6501.869 kb on + strand, within Pf6N2E2_5687at 6501.869 kb on + strand, within Pf6N2E2_5687at 6501.869 kb on + strand, within Pf6N2E2_5687at 6501.869 kb on + strand, within Pf6N2E2_5687at 6501.869 kb on + strand, within Pf6N2E2_5687at 6501.870 kb on - strand, within Pf6N2E2_5687at 6501.870 kb on - strand, within Pf6N2E2_5687at 6501.882 kb on + strand, within Pf6N2E2_5687at 6502.079 kb on + strand, within Pf6N2E2_5687at 6502.079 kb on + strand, within Pf6N2E2_5687at 6502.116 kb on + strand, within Pf6N2E2_5687at 6502.117 kb on - strand, within Pf6N2E2_5687at 6502.117 kb on - strand, within Pf6N2E2_5687at 6502.134 kb on + strand, within Pf6N2E2_5687at 6502.134 kb on + strand, within Pf6N2E2_5687at 6502.135 kb on - strand, within Pf6N2E2_5687at 6502.135 kb on - strand, within Pf6N2E2_5687at 6502.135 kb on - strand, within Pf6N2E2_5687at 6502.135 kb on - strand, within Pf6N2E2_5687at 6502.135 kb on - strand, within Pf6N2E2_5687at 6502.135 kb on - strand, within Pf6N2E2_5687at 6502.135 kb on - strand, within Pf6N2E2_5687at 6502.461 kb on + strand, within Pf6N2E2_5687at 6502.461 kb on + strand, within Pf6N2E2_5687at 6502.461 kb on + strand, within Pf6N2E2_5687at 6502.461 kb on + strand, within Pf6N2E2_5687at 6502.462 kb on - strandat 6502.462 kb on - strand, within Pf6N2E2_5687at 6502.462 kb on - strand, within Pf6N2E2_5687at 6502.462 kb on - strand, within Pf6N2E2_5687at 6502.841 kb on + strandat 6502.909 kb on + strandat 6502.942 kb on - strandat 6502.942 kb on - strandat 6502.942 kb on - strandat 6502.994 kb on + strand, within Pf6N2E2_5688at 6502.994 kb on + strand, within Pf6N2E2_5688at 6502.995 kb on - strand, within Pf6N2E2_5688at 6502.995 kb on - strand, within Pf6N2E2_5688at 6503.097 kb on + strand, within Pf6N2E2_5688at 6503.097 kb on + strand, within Pf6N2E2_5688at 6503.097 kb on + strand, within Pf6N2E2_5688at 6503.098 kb on - strand, within Pf6N2E2_5688at 6503.186 kb on + strand, within Pf6N2E2_5688at 6503.186 kb on + strand, within Pf6N2E2_5688at 6503.186 kb on + strand, within Pf6N2E2_5688at 6503.186 kb on + strand, within Pf6N2E2_5688at 6503.187 kb on - strand, within Pf6N2E2_5688at 6503.187 kb on - strand, within Pf6N2E2_5688at 6503.226 kb on - strand, within Pf6N2E2_5688at 6503.226 kb on - strand, within Pf6N2E2_5688at 6503.278 kb on - strand, within Pf6N2E2_5688at 6503.307 kb on + strand, within Pf6N2E2_5688at 6503.490 kb on + strand, within Pf6N2E2_5688at 6503.490 kb on + strand, within Pf6N2E2_5688at 6503.491 kb on - strand, within Pf6N2E2_5688at 6503.491 kb on - strand, within Pf6N2E2_5688at 6503.491 kb on - strand, within Pf6N2E2_5688at 6503.509 kb on + strand, within Pf6N2E2_5688at 6503.509 kb on + strand, within Pf6N2E2_5688at 6503.510 kb on - strand, within Pf6N2E2_5688at 6503.665 kb on + strandat 6503.665 kb on + strandat 6503.665 kb on + strandat 6503.665 kb on + strandat 6503.666 kb on - strandat 6503.666 kb on - strandat 6503.666 kb on - strandat 6503.666 kb on - strandat 6503.666 kb on - strandat 6503.666 kb on - strandat 6503.700 kb on - strandat 6503.700 kb on - strandat 6503.712 kb on + strandat 6503.712 kb on + strandat 6503.712 kb on + strandat 6503.793 kb on - strand, within Pf6N2E2_5689

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM
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6,500,600 + Pf6N2E2_5686 0.41 -0.9
6,500,600 + Pf6N2E2_5686 0.41 +0.3
6,500,600 + Pf6N2E2_5686 0.41 -0.5
6,500,600 + Pf6N2E2_5686 0.41 +1.0
6,500,600 + Pf6N2E2_5686 0.41 +0.6
6,500,600 + Pf6N2E2_5686 0.41 +0.9
6,500,600 + Pf6N2E2_5686 0.41 -0.1
6,500,601 - Pf6N2E2_5686 0.41 -2.1
6,500,601 - Pf6N2E2_5686 0.41 +0.0
6,500,635 + Pf6N2E2_5686 0.43 +0.9
6,500,635 + Pf6N2E2_5686 0.43 -0.0
6,500,659 - Pf6N2E2_5686 0.45 +0.9
6,500,659 - Pf6N2E2_5686 0.45 -1.3
6,500,854 + Pf6N2E2_5686 0.60 +0.3
6,501,229 + Pf6N2E2_5686 0.88 +0.5
6,501,229 + Pf6N2E2_5686 0.88 +1.1
6,501,229 + Pf6N2E2_5686 0.88 -0.3
6,501,229 + Pf6N2E2_5686 0.88 +0.9
6,501,229 + Pf6N2E2_5686 0.88 +0.7
6,501,230 - Pf6N2E2_5686 0.88 -0.7
6,501,230 - Pf6N2E2_5686 0.88 -0.0
6,501,230 - Pf6N2E2_5686 0.88 +0.2
6,501,230 - Pf6N2E2_5686 0.88 -1.0
6,501,230 - Pf6N2E2_5686 0.88 -0.7
6,501,230 - Pf6N2E2_5686 0.88 +0.1
6,501,262 + +0.7
6,501,263 - -0.1
6,501,308 + -0.1
6,501,309 - -0.7
6,501,309 - -0.9
6,501,309 - +0.0
6,501,435 - -1.7
6,501,498 + -0.1
6,501,499 - -0.7
6,501,499 - -1.7
6,501,542 + -0.8
6,501,542 + -1.9
6,501,543 - -1.6
6,501,543 - -1.1
6,501,543 - -1.9
6,501,543 - -1.7
6,501,546 + -1.9
6,501,546 + -1.3
6,501,546 + -0.8
6,501,546 + -1.6
6,501,547 - -0.9
6,501,547 - -1.9
6,501,547 - +0.5
6,501,547 - -0.3
6,501,547 - -1.6
6,501,615 + Pf6N2E2_5687 0.11 +0.2
6,501,616 - Pf6N2E2_5687 0.11 -3.6
6,501,685 - Pf6N2E2_5687 0.16 +0.1
6,501,798 + Pf6N2E2_5687 0.24 -1.7
6,501,799 - Pf6N2E2_5687 0.24 -1.1
6,501,799 - Pf6N2E2_5687 0.24 -0.5
6,501,799 - Pf6N2E2_5687 0.24 +0.1
6,501,867 + Pf6N2E2_5687 0.29 -1.0
6,501,867 + Pf6N2E2_5687 0.29 +0.2
6,501,867 + Pf6N2E2_5687 0.29 -1.8
6,501,868 - Pf6N2E2_5687 0.29 +1.1
6,501,868 - Pf6N2E2_5687 0.29 +0.1
6,501,869 + Pf6N2E2_5687 0.30 -0.8
6,501,869 + Pf6N2E2_5687 0.30 -0.7
6,501,869 + Pf6N2E2_5687 0.30 -0.9
6,501,869 + Pf6N2E2_5687 0.30 -1.8
6,501,869 + Pf6N2E2_5687 0.30 -2.1
6,501,869 + Pf6N2E2_5687 0.30 +0.1
6,501,869 + Pf6N2E2_5687 0.30 -0.3
6,501,869 + Pf6N2E2_5687 0.30 -1.1
6,501,870 - Pf6N2E2_5687 0.30 +1.1
6,501,870 - Pf6N2E2_5687 0.30 -1.2
6,501,882 + Pf6N2E2_5687 0.30 +1.1
6,502,079 + Pf6N2E2_5687 0.45 -1.1
6,502,079 + Pf6N2E2_5687 0.45 -1.1
6,502,116 + Pf6N2E2_5687 0.48 -0.9
6,502,117 - Pf6N2E2_5687 0.48 +2.1
6,502,117 - Pf6N2E2_5687 0.48 -2.5
6,502,134 + Pf6N2E2_5687 0.49 -1.0
6,502,134 + Pf6N2E2_5687 0.49 -1.7
6,502,135 - Pf6N2E2_5687 0.49 +0.5
6,502,135 - Pf6N2E2_5687 0.49 -0.9
6,502,135 - Pf6N2E2_5687 0.49 -0.5
6,502,135 - Pf6N2E2_5687 0.49 +0.4
6,502,135 - Pf6N2E2_5687 0.49 +0.2
6,502,135 - Pf6N2E2_5687 0.49 -1.5
6,502,135 - Pf6N2E2_5687 0.49 +0.1
6,502,461 + Pf6N2E2_5687 0.73 -0.9
6,502,461 + Pf6N2E2_5687 0.73 -0.1
6,502,461 + Pf6N2E2_5687 0.73 -1.2
6,502,461 + Pf6N2E2_5687 0.73 -0.3
6,502,462 - +0.1
6,502,462 - Pf6N2E2_5687 0.73 +1.1
6,502,462 - Pf6N2E2_5687 0.73 +0.4
6,502,462 - Pf6N2E2_5687 0.73 -1.5
6,502,841 + +0.4
6,502,909 + -0.2
6,502,942 - -0.1
6,502,942 - -0.3
6,502,942 - +0.0
6,502,994 + Pf6N2E2_5688 0.13 +1.4
6,502,994 + Pf6N2E2_5688 0.13 +2.4
6,502,995 - Pf6N2E2_5688 0.13 -0.3
6,502,995 - Pf6N2E2_5688 0.13 +2.2
6,503,097 + Pf6N2E2_5688 0.27 +0.5
6,503,097 + Pf6N2E2_5688 0.27 -0.7
6,503,097 + Pf6N2E2_5688 0.27 +0.5
6,503,098 - Pf6N2E2_5688 0.27 +0.4
6,503,186 + Pf6N2E2_5688 0.39 +0.5
6,503,186 + Pf6N2E2_5688 0.39 +0.4
6,503,186 + Pf6N2E2_5688 0.39 +0.4
6,503,186 + Pf6N2E2_5688 0.39 +0.2
6,503,187 - Pf6N2E2_5688 0.39 +0.3
6,503,187 - Pf6N2E2_5688 0.39 +0.2
6,503,226 - Pf6N2E2_5688 0.44 -0.0
6,503,226 - Pf6N2E2_5688 0.44 +1.3
6,503,278 - Pf6N2E2_5688 0.51 +0.4
6,503,307 + Pf6N2E2_5688 0.55 +0.5
6,503,490 + Pf6N2E2_5688 0.80 -0.6
6,503,490 + Pf6N2E2_5688 0.80 -0.1
6,503,491 - Pf6N2E2_5688 0.80 +2.7
6,503,491 - Pf6N2E2_5688 0.80 +0.5
6,503,491 - Pf6N2E2_5688 0.80 -0.7
6,503,509 + Pf6N2E2_5688 0.82 +0.3
6,503,509 + Pf6N2E2_5688 0.82 +0.4
6,503,510 - Pf6N2E2_5688 0.82 -0.0
6,503,665 + +0.1
6,503,665 + -0.5
6,503,665 + -1.5
6,503,665 + +0.5
6,503,666 - +0.6
6,503,666 - +0.5
6,503,666 - +0.1
6,503,666 - +0.6
6,503,666 - +1.1
6,503,666 - -0.8
6,503,700 - +0.6
6,503,700 - +0.4
6,503,712 + +0.7
6,503,712 + -0.5
6,503,712 + -0.0
6,503,793 - Pf6N2E2_5689 0.13 +0.2

Or see this region's nucleotide sequence