Experiment: Cobalt chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5686 and Pf6N2E2_5687 are separated by 70 nucleotides Pf6N2E2_5687 and Pf6N2E2_5688 are separated by 62 nucleotides Pf6N2E2_5688 and Pf6N2E2_5689 are separated by 92 nucleotides
Pf6N2E2_5686 - glutamine synthetase family protein, at 6,500,051 to 6,501,394
_5686
Pf6N2E2_5687 - Transporter, MFS superfamily, at 6,501,465 to 6,502,832
_5687
Pf6N2E2_5688 - FIG00955605: hypothetical protein, at 6,502,895 to 6,503,641
_5688
Pf6N2E2_5689 - Flagellar biosynthesis protein FlgN, at 6,503,734 to 6,504,201
_5689
Position (kb)
6501
6502
6503 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 6500.600 kb on + strand, within Pf6N2E2_5686 at 6500.600 kb on + strand, within Pf6N2E2_5686 at 6500.600 kb on + strand, within Pf6N2E2_5686 at 6500.600 kb on + strand, within Pf6N2E2_5686 at 6500.600 kb on + strand, within Pf6N2E2_5686 at 6500.600 kb on + strand, within Pf6N2E2_5686 at 6500.600 kb on + strand, within Pf6N2E2_5686 at 6500.601 kb on - strand, within Pf6N2E2_5686 at 6500.601 kb on - strand, within Pf6N2E2_5686 at 6500.635 kb on + strand, within Pf6N2E2_5686 at 6500.635 kb on + strand, within Pf6N2E2_5686 at 6500.659 kb on - strand, within Pf6N2E2_5686 at 6500.659 kb on - strand, within Pf6N2E2_5686 at 6500.854 kb on + strand, within Pf6N2E2_5686 at 6501.229 kb on + strand, within Pf6N2E2_5686 at 6501.229 kb on + strand, within Pf6N2E2_5686 at 6501.229 kb on + strand, within Pf6N2E2_5686 at 6501.229 kb on + strand, within Pf6N2E2_5686 at 6501.229 kb on + strand, within Pf6N2E2_5686 at 6501.230 kb on - strand, within Pf6N2E2_5686 at 6501.230 kb on - strand, within Pf6N2E2_5686 at 6501.230 kb on - strand, within Pf6N2E2_5686 at 6501.230 kb on - strand, within Pf6N2E2_5686 at 6501.230 kb on - strand, within Pf6N2E2_5686 at 6501.230 kb on - strand, within Pf6N2E2_5686 at 6501.262 kb on + strand at 6501.263 kb on - strand at 6501.308 kb on + strand at 6501.309 kb on - strand at 6501.309 kb on - strand at 6501.309 kb on - strand at 6501.435 kb on - strand at 6501.498 kb on + strand at 6501.499 kb on - strand at 6501.499 kb on - strand at 6501.542 kb on + strand at 6501.542 kb on + strand at 6501.543 kb on - strand at 6501.543 kb on - strand at 6501.543 kb on - strand at 6501.543 kb on - strand at 6501.546 kb on + strand at 6501.546 kb on + strand at 6501.546 kb on + strand at 6501.546 kb on + strand at 6501.547 kb on - strand at 6501.547 kb on - strand at 6501.547 kb on - strand at 6501.547 kb on - strand at 6501.547 kb on - strand at 6501.615 kb on + strand, within Pf6N2E2_5687 at 6501.616 kb on - strand, within Pf6N2E2_5687 at 6501.685 kb on - strand, within Pf6N2E2_5687 at 6501.798 kb on + strand, within Pf6N2E2_5687 at 6501.799 kb on - strand, within Pf6N2E2_5687 at 6501.799 kb on - strand, within Pf6N2E2_5687 at 6501.799 kb on - strand, within Pf6N2E2_5687 at 6501.867 kb on + strand, within Pf6N2E2_5687 at 6501.867 kb on + strand, within Pf6N2E2_5687 at 6501.867 kb on + strand, within Pf6N2E2_5687 at 6501.868 kb on - strand, within Pf6N2E2_5687 at 6501.868 kb on - strand, within Pf6N2E2_5687 at 6501.869 kb on + strand, within Pf6N2E2_5687 at 6501.869 kb on + strand, within Pf6N2E2_5687 at 6501.869 kb on + strand, within Pf6N2E2_5687 at 6501.869 kb on + strand, within Pf6N2E2_5687 at 6501.869 kb on + strand, within Pf6N2E2_5687 at 6501.869 kb on + strand, within Pf6N2E2_5687 at 6501.869 kb on + strand, within Pf6N2E2_5687 at 6501.869 kb on + strand, within Pf6N2E2_5687 at 6501.870 kb on - strand, within Pf6N2E2_5687 at 6501.870 kb on - strand, within Pf6N2E2_5687 at 6501.882 kb on + strand, within Pf6N2E2_5687 at 6502.079 kb on + strand, within Pf6N2E2_5687 at 6502.079 kb on + strand, within Pf6N2E2_5687 at 6502.116 kb on + strand, within Pf6N2E2_5687 at 6502.117 kb on - strand, within Pf6N2E2_5687 at 6502.117 kb on - strand, within Pf6N2E2_5687 at 6502.134 kb on + strand, within Pf6N2E2_5687 at 6502.134 kb on + strand, within Pf6N2E2_5687 at 6502.135 kb on - strand, within Pf6N2E2_5687 at 6502.135 kb on - strand, within Pf6N2E2_5687 at 6502.135 kb on - strand, within Pf6N2E2_5687 at 6502.135 kb on - strand, within Pf6N2E2_5687 at 6502.135 kb on - strand, within Pf6N2E2_5687 at 6502.135 kb on - strand, within Pf6N2E2_5687 at 6502.135 kb on - strand, within Pf6N2E2_5687 at 6502.461 kb on + strand, within Pf6N2E2_5687 at 6502.461 kb on + strand, within Pf6N2E2_5687 at 6502.461 kb on + strand, within Pf6N2E2_5687 at 6502.461 kb on + strand, within Pf6N2E2_5687 at 6502.462 kb on - strand at 6502.462 kb on - strand, within Pf6N2E2_5687 at 6502.462 kb on - strand, within Pf6N2E2_5687 at 6502.462 kb on - strand, within Pf6N2E2_5687 at 6502.841 kb on + strand at 6502.909 kb on + strand at 6502.942 kb on - strand at 6502.942 kb on - strand at 6502.942 kb on - strand at 6502.994 kb on + strand, within Pf6N2E2_5688 at 6502.994 kb on + strand, within Pf6N2E2_5688 at 6502.995 kb on - strand, within Pf6N2E2_5688 at 6502.995 kb on - strand, within Pf6N2E2_5688 at 6503.097 kb on + strand, within Pf6N2E2_5688 at 6503.097 kb on + strand, within Pf6N2E2_5688 at 6503.097 kb on + strand, within Pf6N2E2_5688 at 6503.098 kb on - strand, within Pf6N2E2_5688 at 6503.186 kb on + strand, within Pf6N2E2_5688 at 6503.186 kb on + strand, within Pf6N2E2_5688 at 6503.186 kb on + strand, within Pf6N2E2_5688 at 6503.186 kb on + strand, within Pf6N2E2_5688 at 6503.187 kb on - strand, within Pf6N2E2_5688 at 6503.187 kb on - strand, within Pf6N2E2_5688 at 6503.226 kb on - strand, within Pf6N2E2_5688 at 6503.226 kb on - strand, within Pf6N2E2_5688 at 6503.278 kb on - strand, within Pf6N2E2_5688 at 6503.307 kb on + strand, within Pf6N2E2_5688 at 6503.490 kb on + strand, within Pf6N2E2_5688 at 6503.490 kb on + strand, within Pf6N2E2_5688 at 6503.491 kb on - strand, within Pf6N2E2_5688 at 6503.491 kb on - strand, within Pf6N2E2_5688 at 6503.491 kb on - strand, within Pf6N2E2_5688 at 6503.509 kb on + strand, within Pf6N2E2_5688 at 6503.509 kb on + strand, within Pf6N2E2_5688 at 6503.510 kb on - strand, within Pf6N2E2_5688 at 6503.665 kb on + strand at 6503.665 kb on + strand at 6503.665 kb on + strand at 6503.665 kb on + strand at 6503.666 kb on - strand at 6503.666 kb on - strand at 6503.666 kb on - strand at 6503.666 kb on - strand at 6503.666 kb on - strand at 6503.666 kb on - strand at 6503.700 kb on - strand at 6503.700 kb on - strand at 6503.712 kb on + strand at 6503.712 kb on + strand at 6503.712 kb on + strand at 6503.793 kb on - strand, within Pf6N2E2_5689
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM remove 6,500,600 + Pf6N2E2_5686 0.41 -0.9 6,500,600 + Pf6N2E2_5686 0.41 +0.3 6,500,600 + Pf6N2E2_5686 0.41 -0.5 6,500,600 + Pf6N2E2_5686 0.41 +1.0 6,500,600 + Pf6N2E2_5686 0.41 +0.6 6,500,600 + Pf6N2E2_5686 0.41 +0.9 6,500,600 + Pf6N2E2_5686 0.41 -0.1 6,500,601 - Pf6N2E2_5686 0.41 -2.1 6,500,601 - Pf6N2E2_5686 0.41 +0.0 6,500,635 + Pf6N2E2_5686 0.43 +0.9 6,500,635 + Pf6N2E2_5686 0.43 -0.0 6,500,659 - Pf6N2E2_5686 0.45 +0.9 6,500,659 - Pf6N2E2_5686 0.45 -1.3 6,500,854 + Pf6N2E2_5686 0.60 +0.3 6,501,229 + Pf6N2E2_5686 0.88 +0.5 6,501,229 + Pf6N2E2_5686 0.88 +1.1 6,501,229 + Pf6N2E2_5686 0.88 -0.3 6,501,229 + Pf6N2E2_5686 0.88 +0.9 6,501,229 + Pf6N2E2_5686 0.88 +0.7 6,501,230 - Pf6N2E2_5686 0.88 -0.7 6,501,230 - Pf6N2E2_5686 0.88 -0.0 6,501,230 - Pf6N2E2_5686 0.88 +0.2 6,501,230 - Pf6N2E2_5686 0.88 -1.0 6,501,230 - Pf6N2E2_5686 0.88 -0.7 6,501,230 - Pf6N2E2_5686 0.88 +0.1 6,501,262 + +0.7 6,501,263 - -0.1 6,501,308 + -0.1 6,501,309 - -0.7 6,501,309 - -0.9 6,501,309 - +0.0 6,501,435 - -1.7 6,501,498 + -0.1 6,501,499 - -0.7 6,501,499 - -1.7 6,501,542 + -0.8 6,501,542 + -1.9 6,501,543 - -1.6 6,501,543 - -1.1 6,501,543 - -1.9 6,501,543 - -1.7 6,501,546 + -1.9 6,501,546 + -1.3 6,501,546 + -0.8 6,501,546 + -1.6 6,501,547 - -0.9 6,501,547 - -1.9 6,501,547 - +0.5 6,501,547 - -0.3 6,501,547 - -1.6 6,501,615 + Pf6N2E2_5687 0.11 +0.2 6,501,616 - Pf6N2E2_5687 0.11 -3.6 6,501,685 - Pf6N2E2_5687 0.16 +0.1 6,501,798 + Pf6N2E2_5687 0.24 -1.7 6,501,799 - Pf6N2E2_5687 0.24 -1.1 6,501,799 - Pf6N2E2_5687 0.24 -0.5 6,501,799 - Pf6N2E2_5687 0.24 +0.1 6,501,867 + Pf6N2E2_5687 0.29 -1.0 6,501,867 + Pf6N2E2_5687 0.29 +0.2 6,501,867 + Pf6N2E2_5687 0.29 -1.8 6,501,868 - Pf6N2E2_5687 0.29 +1.1 6,501,868 - Pf6N2E2_5687 0.29 +0.1 6,501,869 + Pf6N2E2_5687 0.30 -0.8 6,501,869 + Pf6N2E2_5687 0.30 -0.7 6,501,869 + Pf6N2E2_5687 0.30 -0.9 6,501,869 + Pf6N2E2_5687 0.30 -1.8 6,501,869 + Pf6N2E2_5687 0.30 -2.1 6,501,869 + Pf6N2E2_5687 0.30 +0.1 6,501,869 + Pf6N2E2_5687 0.30 -0.3 6,501,869 + Pf6N2E2_5687 0.30 -1.1 6,501,870 - Pf6N2E2_5687 0.30 +1.1 6,501,870 - Pf6N2E2_5687 0.30 -1.2 6,501,882 + Pf6N2E2_5687 0.30 +1.1 6,502,079 + Pf6N2E2_5687 0.45 -1.1 6,502,079 + Pf6N2E2_5687 0.45 -1.1 6,502,116 + Pf6N2E2_5687 0.48 -0.9 6,502,117 - Pf6N2E2_5687 0.48 +2.1 6,502,117 - Pf6N2E2_5687 0.48 -2.5 6,502,134 + Pf6N2E2_5687 0.49 -1.0 6,502,134 + Pf6N2E2_5687 0.49 -1.7 6,502,135 - Pf6N2E2_5687 0.49 +0.5 6,502,135 - Pf6N2E2_5687 0.49 -0.9 6,502,135 - Pf6N2E2_5687 0.49 -0.5 6,502,135 - Pf6N2E2_5687 0.49 +0.4 6,502,135 - Pf6N2E2_5687 0.49 +0.2 6,502,135 - Pf6N2E2_5687 0.49 -1.5 6,502,135 - Pf6N2E2_5687 0.49 +0.1 6,502,461 + Pf6N2E2_5687 0.73 -0.9 6,502,461 + Pf6N2E2_5687 0.73 -0.1 6,502,461 + Pf6N2E2_5687 0.73 -1.2 6,502,461 + Pf6N2E2_5687 0.73 -0.3 6,502,462 - +0.1 6,502,462 - Pf6N2E2_5687 0.73 +1.1 6,502,462 - Pf6N2E2_5687 0.73 +0.4 6,502,462 - Pf6N2E2_5687 0.73 -1.5 6,502,841 + +0.4 6,502,909 + -0.2 6,502,942 - -0.1 6,502,942 - -0.3 6,502,942 - +0.0 6,502,994 + Pf6N2E2_5688 0.13 +1.4 6,502,994 + Pf6N2E2_5688 0.13 +2.4 6,502,995 - Pf6N2E2_5688 0.13 -0.3 6,502,995 - Pf6N2E2_5688 0.13 +2.2 6,503,097 + Pf6N2E2_5688 0.27 +0.5 6,503,097 + Pf6N2E2_5688 0.27 -0.7 6,503,097 + Pf6N2E2_5688 0.27 +0.5 6,503,098 - Pf6N2E2_5688 0.27 +0.4 6,503,186 + Pf6N2E2_5688 0.39 +0.5 6,503,186 + Pf6N2E2_5688 0.39 +0.4 6,503,186 + Pf6N2E2_5688 0.39 +0.4 6,503,186 + Pf6N2E2_5688 0.39 +0.2 6,503,187 - Pf6N2E2_5688 0.39 +0.3 6,503,187 - Pf6N2E2_5688 0.39 +0.2 6,503,226 - Pf6N2E2_5688 0.44 -0.0 6,503,226 - Pf6N2E2_5688 0.44 +1.3 6,503,278 - Pf6N2E2_5688 0.51 +0.4 6,503,307 + Pf6N2E2_5688 0.55 +0.5 6,503,490 + Pf6N2E2_5688 0.80 -0.6 6,503,490 + Pf6N2E2_5688 0.80 -0.1 6,503,491 - Pf6N2E2_5688 0.80 +2.7 6,503,491 - Pf6N2E2_5688 0.80 +0.5 6,503,491 - Pf6N2E2_5688 0.80 -0.7 6,503,509 + Pf6N2E2_5688 0.82 +0.3 6,503,509 + Pf6N2E2_5688 0.82 +0.4 6,503,510 - Pf6N2E2_5688 0.82 -0.0 6,503,665 + +0.1 6,503,665 + -0.5 6,503,665 + -1.5 6,503,665 + +0.5 6,503,666 - +0.6 6,503,666 - +0.5 6,503,666 - +0.1 6,503,666 - +0.6 6,503,666 - +1.1 6,503,666 - -0.8 6,503,700 - +0.6 6,503,700 - +0.4 6,503,712 + +0.7 6,503,712 + -0.5 6,503,712 + -0.0 6,503,793 - Pf6N2E2_5689 0.13 +0.2
Or see this region's nucleotide sequence