Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5504

Experiment: Cobalt chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5502 and Pf6N2E2_5503 overlap by 14 nucleotidesPf6N2E2_5503 and Pf6N2E2_5504 overlap by 4 nucleotidesPf6N2E2_5504 and Pf6N2E2_5505 are separated by 12 nucleotidesPf6N2E2_5505 and Pf6N2E2_5506 are separated by 119 nucleotides Pf6N2E2_5502 - 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases, at 6,319,949 to 6,321,493 _5502 Pf6N2E2_5503 - FIG01248689: hypothetical protein, at 6,321,480 to 6,322,454 _5503 Pf6N2E2_5504 - INTEGRAL MEMBRANE PROTEIN (Rhomboid family), at 6,322,451 to 6,323,176 _5504 Pf6N2E2_5505 - hypothetical protein, at 6,323,189 to 6,323,314 _5505 Pf6N2E2_5506 - Exodeoxyribonuclease I (EC 3.1.11.1), at 6,323,434 to 6,324,870 _5506 Position (kb) 6322 6323 6324Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6321.520 kb on + strandat 6321.520 kb on + strandat 6321.520 kb on + strandat 6321.521 kb on - strandat 6321.521 kb on - strandat 6321.559 kb on + strandat 6321.560 kb on - strandat 6321.560 kb on - strandat 6321.651 kb on + strand, within Pf6N2E2_5503at 6321.652 kb on - strand, within Pf6N2E2_5503at 6321.946 kb on + strand, within Pf6N2E2_5503at 6321.946 kb on + strand, within Pf6N2E2_5503at 6321.946 kb on + strand, within Pf6N2E2_5503at 6321.946 kb on + strand, within Pf6N2E2_5503at 6321.946 kb on + strand, within Pf6N2E2_5503at 6321.946 kb on + strand, within Pf6N2E2_5503at 6321.946 kb on + strand, within Pf6N2E2_5503at 6321.947 kb on - strand, within Pf6N2E2_5503at 6321.947 kb on - strand, within Pf6N2E2_5503at 6321.947 kb on - strand, within Pf6N2E2_5503at 6321.947 kb on - strand, within Pf6N2E2_5503at 6321.947 kb on - strand, within Pf6N2E2_5503at 6321.947 kb on - strand, within Pf6N2E2_5503at 6321.947 kb on - strand, within Pf6N2E2_5503at 6321.947 kb on - strand, within Pf6N2E2_5503at 6321.947 kb on - strand, within Pf6N2E2_5503at 6321.947 kb on - strand, within Pf6N2E2_5503at 6321.947 kb on - strand, within Pf6N2E2_5503at 6321.947 kb on - strand, within Pf6N2E2_5503at 6322.021 kb on + strand, within Pf6N2E2_5503at 6322.021 kb on + strand, within Pf6N2E2_5503at 6322.021 kb on + strand, within Pf6N2E2_5503at 6322.021 kb on + strand, within Pf6N2E2_5503at 6322.021 kb on + strand, within Pf6N2E2_5503at 6322.021 kb on + strand, within Pf6N2E2_5503at 6322.021 kb on + strand, within Pf6N2E2_5503at 6322.021 kb on + strand, within Pf6N2E2_5503at 6322.021 kb on + strand, within Pf6N2E2_5503at 6322.021 kb on + strand, within Pf6N2E2_5503at 6322.021 kb on + strand, within Pf6N2E2_5503at 6322.021 kb on + strand, within Pf6N2E2_5503at 6322.021 kb on + strand, within Pf6N2E2_5503at 6322.021 kb on + strand, within Pf6N2E2_5503at 6322.021 kb on + strand, within Pf6N2E2_5503at 6322.021 kb on + strand, within Pf6N2E2_5503at 6322.021 kb on + strand, within Pf6N2E2_5503at 6322.022 kb on - strand, within Pf6N2E2_5503at 6322.022 kb on - strand, within Pf6N2E2_5503at 6322.022 kb on - strand, within Pf6N2E2_5503at 6322.022 kb on - strand, within Pf6N2E2_5503at 6322.022 kb on - strand, within Pf6N2E2_5503at 6322.022 kb on - strand, within Pf6N2E2_5503at 6322.022 kb on - strand, within Pf6N2E2_5503at 6322.022 kb on - strand, within Pf6N2E2_5503at 6322.022 kb on - strand, within Pf6N2E2_5503at 6322.022 kb on - strand, within Pf6N2E2_5503at 6322.022 kb on - strand, within Pf6N2E2_5503at 6322.022 kb on - strand, within Pf6N2E2_5503at 6322.022 kb on - strand, within Pf6N2E2_5503at 6322.022 kb on - strand, within Pf6N2E2_5503at 6322.067 kb on - strand, within Pf6N2E2_5503at 6322.067 kb on - strand, within Pf6N2E2_5503at 6322.067 kb on - strand, within Pf6N2E2_5503at 6322.087 kb on + strand, within Pf6N2E2_5503at 6322.088 kb on - strand, within Pf6N2E2_5503at 6322.088 kb on - strand, within Pf6N2E2_5503at 6322.232 kb on - strand, within Pf6N2E2_5503at 6322.336 kb on + strand, within Pf6N2E2_5503at 6322.337 kb on - strand, within Pf6N2E2_5503at 6322.337 kb on - strand, within Pf6N2E2_5503at 6322.337 kb on - strand, within Pf6N2E2_5503at 6322.337 kb on - strand, within Pf6N2E2_5503at 6322.923 kb on + strand, within Pf6N2E2_5504at 6322.923 kb on + strand, within Pf6N2E2_5504at 6322.923 kb on + strand, within Pf6N2E2_5504at 6322.923 kb on + strand, within Pf6N2E2_5504at 6322.924 kb on - strand, within Pf6N2E2_5504at 6322.924 kb on - strand, within Pf6N2E2_5504at 6322.924 kb on - strand, within Pf6N2E2_5504at 6322.924 kb on - strand, within Pf6N2E2_5504at 6322.924 kb on - strand, within Pf6N2E2_5504at 6322.924 kb on - strand, within Pf6N2E2_5504at 6323.025 kb on - strand, within Pf6N2E2_5504at 6323.226 kb on + strand, within Pf6N2E2_5505at 6323.226 kb on + strand, within Pf6N2E2_5505at 6323.251 kb on + strand, within Pf6N2E2_5505at 6323.310 kb on + strandat 6323.310 kb on + strandat 6323.310 kb on + strandat 6323.311 kb on - strandat 6323.311 kb on - strandat 6323.401 kb on - strandat 6323.401 kb on - strandat 6323.458 kb on + strandat 6323.459 kb on - strandat 6323.560 kb on + strandat 6323.560 kb on + strandat 6323.845 kb on + strand, within Pf6N2E2_5506at 6323.895 kb on - strand, within Pf6N2E2_5506at 6324.096 kb on + strand, within Pf6N2E2_5506at 6324.096 kb on + strand, within Pf6N2E2_5506at 6324.097 kb on - strand, within Pf6N2E2_5506at 6324.127 kb on + strand, within Pf6N2E2_5506at 6324.128 kb on - strand, within Pf6N2E2_5506at 6324.128 kb on - strand, within Pf6N2E2_5506

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM
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6,321,520 + +0.4
6,321,520 + +0.1
6,321,520 + -2.9
6,321,521 - +0.1
6,321,521 - +1.4
6,321,559 + +0.2
6,321,560 - +1.5
6,321,560 - +1.3
6,321,651 + Pf6N2E2_5503 0.18 +0.7
6,321,652 - Pf6N2E2_5503 0.18 +1.5
6,321,946 + Pf6N2E2_5503 0.48 +0.8
6,321,946 + Pf6N2E2_5503 0.48 +0.4
6,321,946 + Pf6N2E2_5503 0.48 +0.8
6,321,946 + Pf6N2E2_5503 0.48 +0.5
6,321,946 + Pf6N2E2_5503 0.48 +0.6
6,321,946 + Pf6N2E2_5503 0.48 +0.2
6,321,946 + Pf6N2E2_5503 0.48 -0.9
6,321,947 - Pf6N2E2_5503 0.48 +2.1
6,321,947 - Pf6N2E2_5503 0.48 +1.4
6,321,947 - Pf6N2E2_5503 0.48 +0.8
6,321,947 - Pf6N2E2_5503 0.48 +1.4
6,321,947 - Pf6N2E2_5503 0.48 -0.0
6,321,947 - Pf6N2E2_5503 0.48 +1.0
6,321,947 - Pf6N2E2_5503 0.48 +1.9
6,321,947 - Pf6N2E2_5503 0.48 +0.9
6,321,947 - Pf6N2E2_5503 0.48 +0.8
6,321,947 - Pf6N2E2_5503 0.48 +0.9
6,321,947 - Pf6N2E2_5503 0.48 +1.5
6,321,947 - Pf6N2E2_5503 0.48 +0.6
6,322,021 + Pf6N2E2_5503 0.55 +0.1
6,322,021 + Pf6N2E2_5503 0.55 +1.0
6,322,021 + Pf6N2E2_5503 0.55 +0.0
6,322,021 + Pf6N2E2_5503 0.55 -1.2
6,322,021 + Pf6N2E2_5503 0.55 +0.6
6,322,021 + Pf6N2E2_5503 0.55 -0.0
6,322,021 + Pf6N2E2_5503 0.55 +2.3
6,322,021 + Pf6N2E2_5503 0.55 -0.9
6,322,021 + Pf6N2E2_5503 0.55 +0.8
6,322,021 + Pf6N2E2_5503 0.55 -0.5
6,322,021 + Pf6N2E2_5503 0.55 +1.3
6,322,021 + Pf6N2E2_5503 0.55 +0.1
6,322,021 + Pf6N2E2_5503 0.55 +0.0
6,322,021 + Pf6N2E2_5503 0.55 +0.1
6,322,021 + Pf6N2E2_5503 0.55 +0.5
6,322,021 + Pf6N2E2_5503 0.55 +0.1
6,322,021 + Pf6N2E2_5503 0.55 +0.6
6,322,022 - Pf6N2E2_5503 0.56 +0.5
6,322,022 - Pf6N2E2_5503 0.56 +1.8
6,322,022 - Pf6N2E2_5503 0.56 +1.1
6,322,022 - Pf6N2E2_5503 0.56 +0.8
6,322,022 - Pf6N2E2_5503 0.56 +2.5
6,322,022 - Pf6N2E2_5503 0.56 +0.6
6,322,022 - Pf6N2E2_5503 0.56 +0.7
6,322,022 - Pf6N2E2_5503 0.56 +0.4
6,322,022 - Pf6N2E2_5503 0.56 +0.5
6,322,022 - Pf6N2E2_5503 0.56 -0.5
6,322,022 - Pf6N2E2_5503 0.56 +0.5
6,322,022 - Pf6N2E2_5503 0.56 +0.4
6,322,022 - Pf6N2E2_5503 0.56 -0.1
6,322,022 - Pf6N2E2_5503 0.56 +0.2
6,322,067 - Pf6N2E2_5503 0.60 +1.1
6,322,067 - Pf6N2E2_5503 0.60 +0.9
6,322,067 - Pf6N2E2_5503 0.60 +1.6
6,322,087 + Pf6N2E2_5503 0.62 +1.1
6,322,088 - Pf6N2E2_5503 0.62 +0.8
6,322,088 - Pf6N2E2_5503 0.62 +0.4
6,322,232 - Pf6N2E2_5503 0.77 +0.7
6,322,336 + Pf6N2E2_5503 0.88 +0.4
6,322,337 - Pf6N2E2_5503 0.88 +1.1
6,322,337 - Pf6N2E2_5503 0.88 +0.1
6,322,337 - Pf6N2E2_5503 0.88 +1.1
6,322,337 - Pf6N2E2_5503 0.88 +0.8
6,322,923 + Pf6N2E2_5504 0.65 +1.5
6,322,923 + Pf6N2E2_5504 0.65 +1.1
6,322,923 + Pf6N2E2_5504 0.65 +0.3
6,322,923 + Pf6N2E2_5504 0.65 +1.4
6,322,924 - Pf6N2E2_5504 0.65 +0.9
6,322,924 - Pf6N2E2_5504 0.65 +1.6
6,322,924 - Pf6N2E2_5504 0.65 +0.5
6,322,924 - Pf6N2E2_5504 0.65 +0.1
6,322,924 - Pf6N2E2_5504 0.65 +1.1
6,322,924 - Pf6N2E2_5504 0.65 +0.7
6,323,025 - Pf6N2E2_5504 0.79 +1.6
6,323,226 + Pf6N2E2_5505 0.29 +0.1
6,323,226 + Pf6N2E2_5505 0.29 +1.1
6,323,251 + Pf6N2E2_5505 0.49 +0.6
6,323,310 + +0.1
6,323,310 + +0.5
6,323,310 + +1.5
6,323,311 - +0.7
6,323,311 - +0.6
6,323,401 - +0.7
6,323,401 - +1.1
6,323,458 + -0.5
6,323,459 - +1.2
6,323,560 + -1.5
6,323,560 + +0.2
6,323,845 + Pf6N2E2_5506 0.29 -0.5
6,323,895 - Pf6N2E2_5506 0.32 +0.0
6,324,096 + Pf6N2E2_5506 0.46 +0.9
6,324,096 + Pf6N2E2_5506 0.46 -0.1
6,324,097 - Pf6N2E2_5506 0.46 +1.2
6,324,127 + Pf6N2E2_5506 0.48 +0.5
6,324,128 - Pf6N2E2_5506 0.48 +2.0
6,324,128 - Pf6N2E2_5506 0.48 +1.7

Or see this region's nucleotide sequence