Experiment: Cobalt chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5502 and Pf6N2E2_5503 overlap by 14 nucleotides Pf6N2E2_5503 and Pf6N2E2_5504 overlap by 4 nucleotides Pf6N2E2_5504 and Pf6N2E2_5505 are separated by 12 nucleotides Pf6N2E2_5505 and Pf6N2E2_5506 are separated by 119 nucleotides
Pf6N2E2_5502 - 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases, at 6,319,949 to 6,321,493
_5502
Pf6N2E2_5503 - FIG01248689: hypothetical protein, at 6,321,480 to 6,322,454
_5503
Pf6N2E2_5504 - INTEGRAL MEMBRANE PROTEIN (Rhomboid family), at 6,322,451 to 6,323,176
_5504
Pf6N2E2_5505 - hypothetical protein, at 6,323,189 to 6,323,314
_5505
Pf6N2E2_5506 - Exodeoxyribonuclease I (EC 3.1.11.1), at 6,323,434 to 6,324,870
_5506
Position (kb)
6322
6323
6324 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 6321.520 kb on + strand at 6321.520 kb on + strand at 6321.520 kb on + strand at 6321.521 kb on - strand at 6321.521 kb on - strand at 6321.559 kb on + strand at 6321.560 kb on - strand at 6321.560 kb on - strand at 6321.651 kb on + strand, within Pf6N2E2_5503 at 6321.652 kb on - strand, within Pf6N2E2_5503 at 6321.946 kb on + strand, within Pf6N2E2_5503 at 6321.946 kb on + strand, within Pf6N2E2_5503 at 6321.946 kb on + strand, within Pf6N2E2_5503 at 6321.946 kb on + strand, within Pf6N2E2_5503 at 6321.946 kb on + strand, within Pf6N2E2_5503 at 6321.946 kb on + strand, within Pf6N2E2_5503 at 6321.946 kb on + strand, within Pf6N2E2_5503 at 6321.947 kb on - strand, within Pf6N2E2_5503 at 6321.947 kb on - strand, within Pf6N2E2_5503 at 6321.947 kb on - strand, within Pf6N2E2_5503 at 6321.947 kb on - strand, within Pf6N2E2_5503 at 6321.947 kb on - strand, within Pf6N2E2_5503 at 6321.947 kb on - strand, within Pf6N2E2_5503 at 6321.947 kb on - strand, within Pf6N2E2_5503 at 6321.947 kb on - strand, within Pf6N2E2_5503 at 6321.947 kb on - strand, within Pf6N2E2_5503 at 6321.947 kb on - strand, within Pf6N2E2_5503 at 6321.947 kb on - strand, within Pf6N2E2_5503 at 6321.947 kb on - strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.067 kb on - strand, within Pf6N2E2_5503 at 6322.067 kb on - strand, within Pf6N2E2_5503 at 6322.067 kb on - strand, within Pf6N2E2_5503 at 6322.087 kb on + strand, within Pf6N2E2_5503 at 6322.088 kb on - strand, within Pf6N2E2_5503 at 6322.088 kb on - strand, within Pf6N2E2_5503 at 6322.232 kb on - strand, within Pf6N2E2_5503 at 6322.336 kb on + strand, within Pf6N2E2_5503 at 6322.337 kb on - strand, within Pf6N2E2_5503 at 6322.337 kb on - strand, within Pf6N2E2_5503 at 6322.337 kb on - strand, within Pf6N2E2_5503 at 6322.337 kb on - strand, within Pf6N2E2_5503 at 6322.923 kb on + strand, within Pf6N2E2_5504 at 6322.923 kb on + strand, within Pf6N2E2_5504 at 6322.923 kb on + strand, within Pf6N2E2_5504 at 6322.923 kb on + strand, within Pf6N2E2_5504 at 6322.924 kb on - strand, within Pf6N2E2_5504 at 6322.924 kb on - strand, within Pf6N2E2_5504 at 6322.924 kb on - strand, within Pf6N2E2_5504 at 6322.924 kb on - strand, within Pf6N2E2_5504 at 6322.924 kb on - strand, within Pf6N2E2_5504 at 6322.924 kb on - strand, within Pf6N2E2_5504 at 6323.025 kb on - strand, within Pf6N2E2_5504 at 6323.226 kb on + strand, within Pf6N2E2_5505 at 6323.226 kb on + strand, within Pf6N2E2_5505 at 6323.251 kb on + strand, within Pf6N2E2_5505 at 6323.310 kb on + strand at 6323.310 kb on + strand at 6323.310 kb on + strand at 6323.311 kb on - strand at 6323.311 kb on - strand at 6323.401 kb on - strand at 6323.401 kb on - strand at 6323.458 kb on + strand at 6323.459 kb on - strand at 6323.560 kb on + strand at 6323.560 kb on + strand at 6323.845 kb on + strand, within Pf6N2E2_5506 at 6323.895 kb on - strand, within Pf6N2E2_5506 at 6324.096 kb on + strand, within Pf6N2E2_5506 at 6324.096 kb on + strand, within Pf6N2E2_5506 at 6324.097 kb on - strand, within Pf6N2E2_5506 at 6324.127 kb on + strand, within Pf6N2E2_5506 at 6324.128 kb on - strand, within Pf6N2E2_5506 at 6324.128 kb on - strand, within Pf6N2E2_5506
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM remove 6,321,520 + +0.4 6,321,520 + +0.1 6,321,520 + -2.9 6,321,521 - +0.1 6,321,521 - +1.4 6,321,559 + +0.2 6,321,560 - +1.5 6,321,560 - +1.3 6,321,651 + Pf6N2E2_5503 0.18 +0.7 6,321,652 - Pf6N2E2_5503 0.18 +1.5 6,321,946 + Pf6N2E2_5503 0.48 +0.8 6,321,946 + Pf6N2E2_5503 0.48 +0.4 6,321,946 + Pf6N2E2_5503 0.48 +0.8 6,321,946 + Pf6N2E2_5503 0.48 +0.5 6,321,946 + Pf6N2E2_5503 0.48 +0.6 6,321,946 + Pf6N2E2_5503 0.48 +0.2 6,321,946 + Pf6N2E2_5503 0.48 -0.9 6,321,947 - Pf6N2E2_5503 0.48 +2.1 6,321,947 - Pf6N2E2_5503 0.48 +1.4 6,321,947 - Pf6N2E2_5503 0.48 +0.8 6,321,947 - Pf6N2E2_5503 0.48 +1.4 6,321,947 - Pf6N2E2_5503 0.48 -0.0 6,321,947 - Pf6N2E2_5503 0.48 +1.0 6,321,947 - Pf6N2E2_5503 0.48 +1.9 6,321,947 - Pf6N2E2_5503 0.48 +0.9 6,321,947 - Pf6N2E2_5503 0.48 +0.8 6,321,947 - Pf6N2E2_5503 0.48 +0.9 6,321,947 - Pf6N2E2_5503 0.48 +1.5 6,321,947 - Pf6N2E2_5503 0.48 +0.6 6,322,021 + Pf6N2E2_5503 0.55 +0.1 6,322,021 + Pf6N2E2_5503 0.55 +1.0 6,322,021 + Pf6N2E2_5503 0.55 +0.0 6,322,021 + Pf6N2E2_5503 0.55 -1.2 6,322,021 + Pf6N2E2_5503 0.55 +0.6 6,322,021 + Pf6N2E2_5503 0.55 -0.0 6,322,021 + Pf6N2E2_5503 0.55 +2.3 6,322,021 + Pf6N2E2_5503 0.55 -0.9 6,322,021 + Pf6N2E2_5503 0.55 +0.8 6,322,021 + Pf6N2E2_5503 0.55 -0.5 6,322,021 + Pf6N2E2_5503 0.55 +1.3 6,322,021 + Pf6N2E2_5503 0.55 +0.1 6,322,021 + Pf6N2E2_5503 0.55 +0.0 6,322,021 + Pf6N2E2_5503 0.55 +0.1 6,322,021 + Pf6N2E2_5503 0.55 +0.5 6,322,021 + Pf6N2E2_5503 0.55 +0.1 6,322,021 + Pf6N2E2_5503 0.55 +0.6 6,322,022 - Pf6N2E2_5503 0.56 +0.5 6,322,022 - Pf6N2E2_5503 0.56 +1.8 6,322,022 - Pf6N2E2_5503 0.56 +1.1 6,322,022 - Pf6N2E2_5503 0.56 +0.8 6,322,022 - Pf6N2E2_5503 0.56 +2.5 6,322,022 - Pf6N2E2_5503 0.56 +0.6 6,322,022 - Pf6N2E2_5503 0.56 +0.7 6,322,022 - Pf6N2E2_5503 0.56 +0.4 6,322,022 - Pf6N2E2_5503 0.56 +0.5 6,322,022 - Pf6N2E2_5503 0.56 -0.5 6,322,022 - Pf6N2E2_5503 0.56 +0.5 6,322,022 - Pf6N2E2_5503 0.56 +0.4 6,322,022 - Pf6N2E2_5503 0.56 -0.1 6,322,022 - Pf6N2E2_5503 0.56 +0.2 6,322,067 - Pf6N2E2_5503 0.60 +1.1 6,322,067 - Pf6N2E2_5503 0.60 +0.9 6,322,067 - Pf6N2E2_5503 0.60 +1.6 6,322,087 + Pf6N2E2_5503 0.62 +1.1 6,322,088 - Pf6N2E2_5503 0.62 +0.8 6,322,088 - Pf6N2E2_5503 0.62 +0.4 6,322,232 - Pf6N2E2_5503 0.77 +0.7 6,322,336 + Pf6N2E2_5503 0.88 +0.4 6,322,337 - Pf6N2E2_5503 0.88 +1.1 6,322,337 - Pf6N2E2_5503 0.88 +0.1 6,322,337 - Pf6N2E2_5503 0.88 +1.1 6,322,337 - Pf6N2E2_5503 0.88 +0.8 6,322,923 + Pf6N2E2_5504 0.65 +1.5 6,322,923 + Pf6N2E2_5504 0.65 +1.1 6,322,923 + Pf6N2E2_5504 0.65 +0.3 6,322,923 + Pf6N2E2_5504 0.65 +1.4 6,322,924 - Pf6N2E2_5504 0.65 +0.9 6,322,924 - Pf6N2E2_5504 0.65 +1.6 6,322,924 - Pf6N2E2_5504 0.65 +0.5 6,322,924 - Pf6N2E2_5504 0.65 +0.1 6,322,924 - Pf6N2E2_5504 0.65 +1.1 6,322,924 - Pf6N2E2_5504 0.65 +0.7 6,323,025 - Pf6N2E2_5504 0.79 +1.6 6,323,226 + Pf6N2E2_5505 0.29 +0.1 6,323,226 + Pf6N2E2_5505 0.29 +1.1 6,323,251 + Pf6N2E2_5505 0.49 +0.6 6,323,310 + +0.1 6,323,310 + +0.5 6,323,310 + +1.5 6,323,311 - +0.7 6,323,311 - +0.6 6,323,401 - +0.7 6,323,401 - +1.1 6,323,458 + -0.5 6,323,459 - +1.2 6,323,560 + -1.5 6,323,560 + +0.2 6,323,845 + Pf6N2E2_5506 0.29 -0.5 6,323,895 - Pf6N2E2_5506 0.32 +0.0 6,324,096 + Pf6N2E2_5506 0.46 +0.9 6,324,096 + Pf6N2E2_5506 0.46 -0.1 6,324,097 - Pf6N2E2_5506 0.46 +1.2 6,324,127 + Pf6N2E2_5506 0.48 +0.5 6,324,128 - Pf6N2E2_5506 0.48 +2.0 6,324,128 - Pf6N2E2_5506 0.48 +1.7
Or see this region's nucleotide sequence