Experiment: Cobalt chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5415 and Pf6N2E2_5416 are separated by 468 nucleotides Pf6N2E2_5416 and Pf6N2E2_5417 are separated by 163 nucleotides
Pf6N2E2_5415 - DNA-binding protein HU-beta, at 6,218,504 to 6,218,785
_5415
Pf6N2E2_5416 - Ribosomal RNA large subunit methyltransferase F (EC 2.1.1.51), at 6,219,254 to 6,220,279
_5416
Pf6N2E2_5417 - Valyl-tRNA synthetase (EC 6.1.1.9), at 6,220,443 to 6,223,289
_5417
Position (kb)
6219
6220
6221 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 6218.274 kb on + strand at 6218.274 kb on + strand at 6218.274 kb on + strand at 6218.274 kb on + strand at 6218.275 kb on - strand at 6218.284 kb on + strand at 6218.284 kb on + strand at 6218.389 kb on + strand at 6218.389 kb on + strand at 6218.389 kb on + strand at 6218.389 kb on + strand at 6218.389 kb on + strand at 6218.389 kb on + strand at 6218.389 kb on + strand at 6218.389 kb on + strand at 6218.389 kb on + strand at 6218.389 kb on + strand at 6218.389 kb on + strand at 6218.389 kb on + strand at 6218.390 kb on - strand at 6218.390 kb on - strand at 6218.390 kb on - strand at 6218.392 kb on + strand at 6218.393 kb on - strand at 6218.487 kb on + strand at 6218.501 kb on + strand at 6218.501 kb on + strand at 6218.501 kb on + strand at 6218.501 kb on + strand at 6218.502 kb on - strand at 6218.502 kb on - strand at 6218.512 kb on + strand at 6218.513 kb on - strand at 6218.516 kb on - strand at 6218.550 kb on + strand, within Pf6N2E2_5415 at 6218.783 kb on + strand at 6219.191 kb on + strand at 6219.191 kb on + strand at 6219.954 kb on + strand, within Pf6N2E2_5416 at 6219.954 kb on + strand, within Pf6N2E2_5416 at 6219.954 kb on + strand, within Pf6N2E2_5416 at 6219.954 kb on + strand, within Pf6N2E2_5416 at 6219.954 kb on + strand, within Pf6N2E2_5416 at 6219.954 kb on + strand, within Pf6N2E2_5416 at 6219.954 kb on + strand, within Pf6N2E2_5416 at 6219.954 kb on + strand, within Pf6N2E2_5416 at 6219.954 kb on + strand, within Pf6N2E2_5416 at 6219.955 kb on - strand, within Pf6N2E2_5416 at 6219.955 kb on - strand, within Pf6N2E2_5416 at 6219.955 kb on - strand, within Pf6N2E2_5416 at 6219.955 kb on - strand, within Pf6N2E2_5416 at 6219.987 kb on + strand, within Pf6N2E2_5416 at 6219.987 kb on + strand, within Pf6N2E2_5416 at 6219.987 kb on + strand, within Pf6N2E2_5416 at 6219.988 kb on - strand, within Pf6N2E2_5416 at 6219.988 kb on - strand, within Pf6N2E2_5416 at 6219.988 kb on - strand, within Pf6N2E2_5416 at 6219.988 kb on - strand, within Pf6N2E2_5416 at 6220.020 kb on + strand, within Pf6N2E2_5416 at 6220.021 kb on - strand, within Pf6N2E2_5416 at 6220.021 kb on - strand, within Pf6N2E2_5416 at 6220.021 kb on - strand, within Pf6N2E2_5416 at 6220.211 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM remove 6,218,274 + +0.7 6,218,274 + -0.3 6,218,274 + +0.3 6,218,274 + +1.5 6,218,275 - +2.9 6,218,284 + -0.3 6,218,284 + +2.1 6,218,389 + +1.5 6,218,389 + +1.4 6,218,389 + +1.5 6,218,389 + +1.4 6,218,389 + +0.4 6,218,389 + +0.8 6,218,389 + +1.1 6,218,389 + +1.4 6,218,389 + +2.8 6,218,389 + +1.0 6,218,389 + +2.1 6,218,389 + +1.7 6,218,390 - +1.1 6,218,390 - +0.6 6,218,390 - +3.1 6,218,392 + +1.5 6,218,393 - +0.7 6,218,487 + +2.1 6,218,501 + +4.3 6,218,501 + +2.6 6,218,501 + +2.2 6,218,501 + +2.1 6,218,502 - +2.7 6,218,502 - +2.7 6,218,512 + +2.2 6,218,513 - +1.4 6,218,516 - +2.1 6,218,550 + Pf6N2E2_5415 0.16 +2.5 6,218,783 + +2.5 6,219,191 + -0.7 6,219,191 + +0.6 6,219,954 + Pf6N2E2_5416 0.68 +0.5 6,219,954 + Pf6N2E2_5416 0.68 -0.4 6,219,954 + Pf6N2E2_5416 0.68 +1.3 6,219,954 + Pf6N2E2_5416 0.68 +1.2 6,219,954 + Pf6N2E2_5416 0.68 +0.5 6,219,954 + Pf6N2E2_5416 0.68 +1.1 6,219,954 + Pf6N2E2_5416 0.68 +1.7 6,219,954 + Pf6N2E2_5416 0.68 +1.1 6,219,954 + Pf6N2E2_5416 0.68 +1.7 6,219,955 - Pf6N2E2_5416 0.68 -0.1 6,219,955 - Pf6N2E2_5416 0.68 -0.2 6,219,955 - Pf6N2E2_5416 0.68 +1.4 6,219,955 - Pf6N2E2_5416 0.68 +0.6 6,219,987 + Pf6N2E2_5416 0.71 +2.2 6,219,987 + Pf6N2E2_5416 0.71 +0.8 6,219,987 + Pf6N2E2_5416 0.71 +1.9 6,219,988 - Pf6N2E2_5416 0.72 +2.7 6,219,988 - Pf6N2E2_5416 0.72 +0.9 6,219,988 - Pf6N2E2_5416 0.72 +0.9 6,219,988 - Pf6N2E2_5416 0.72 -0.0 6,220,020 + Pf6N2E2_5416 0.75 +0.6 6,220,021 - Pf6N2E2_5416 0.75 +0.7 6,220,021 - Pf6N2E2_5416 0.75 +1.4 6,220,021 - Pf6N2E2_5416 0.75 +2.1 6,220,211 + +1.0
Or see this region's nucleotide sequence