Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5416

Experiment: Cobalt chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5415 and Pf6N2E2_5416 are separated by 468 nucleotidesPf6N2E2_5416 and Pf6N2E2_5417 are separated by 163 nucleotides Pf6N2E2_5415 - DNA-binding protein HU-beta, at 6,218,504 to 6,218,785 _5415 Pf6N2E2_5416 - Ribosomal RNA large subunit methyltransferase F (EC 2.1.1.51), at 6,219,254 to 6,220,279 _5416 Pf6N2E2_5417 - Valyl-tRNA synthetase (EC 6.1.1.9), at 6,220,443 to 6,223,289 _5417 Position (kb) 6219 6220 6221Strain fitness (log2 ratio) -1 0 1 2 3 4at 6218.274 kb on + strandat 6218.274 kb on + strandat 6218.274 kb on + strandat 6218.274 kb on + strandat 6218.275 kb on - strandat 6218.284 kb on + strandat 6218.284 kb on + strandat 6218.389 kb on + strandat 6218.389 kb on + strandat 6218.389 kb on + strandat 6218.389 kb on + strandat 6218.389 kb on + strandat 6218.389 kb on + strandat 6218.389 kb on + strandat 6218.389 kb on + strandat 6218.389 kb on + strandat 6218.389 kb on + strandat 6218.389 kb on + strandat 6218.389 kb on + strandat 6218.390 kb on - strandat 6218.390 kb on - strandat 6218.390 kb on - strandat 6218.392 kb on + strandat 6218.393 kb on - strandat 6218.487 kb on + strandat 6218.501 kb on + strandat 6218.501 kb on + strandat 6218.501 kb on + strandat 6218.501 kb on + strandat 6218.502 kb on - strandat 6218.502 kb on - strandat 6218.512 kb on + strandat 6218.513 kb on - strandat 6218.516 kb on - strandat 6218.550 kb on + strand, within Pf6N2E2_5415at 6218.783 kb on + strandat 6219.191 kb on + strandat 6219.191 kb on + strandat 6219.954 kb on + strand, within Pf6N2E2_5416at 6219.954 kb on + strand, within Pf6N2E2_5416at 6219.954 kb on + strand, within Pf6N2E2_5416at 6219.954 kb on + strand, within Pf6N2E2_5416at 6219.954 kb on + strand, within Pf6N2E2_5416at 6219.954 kb on + strand, within Pf6N2E2_5416at 6219.954 kb on + strand, within Pf6N2E2_5416at 6219.954 kb on + strand, within Pf6N2E2_5416at 6219.954 kb on + strand, within Pf6N2E2_5416at 6219.955 kb on - strand, within Pf6N2E2_5416at 6219.955 kb on - strand, within Pf6N2E2_5416at 6219.955 kb on - strand, within Pf6N2E2_5416at 6219.955 kb on - strand, within Pf6N2E2_5416at 6219.987 kb on + strand, within Pf6N2E2_5416at 6219.987 kb on + strand, within Pf6N2E2_5416at 6219.987 kb on + strand, within Pf6N2E2_5416at 6219.988 kb on - strand, within Pf6N2E2_5416at 6219.988 kb on - strand, within Pf6N2E2_5416at 6219.988 kb on - strand, within Pf6N2E2_5416at 6219.988 kb on - strand, within Pf6N2E2_5416at 6220.020 kb on + strand, within Pf6N2E2_5416at 6220.021 kb on - strand, within Pf6N2E2_5416at 6220.021 kb on - strand, within Pf6N2E2_5416at 6220.021 kb on - strand, within Pf6N2E2_5416at 6220.211 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM
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6,218,274 + +0.7
6,218,274 + -0.3
6,218,274 + +0.3
6,218,274 + +1.5
6,218,275 - +2.9
6,218,284 + -0.3
6,218,284 + +2.1
6,218,389 + +1.5
6,218,389 + +1.4
6,218,389 + +1.5
6,218,389 + +1.4
6,218,389 + +0.4
6,218,389 + +0.8
6,218,389 + +1.1
6,218,389 + +1.4
6,218,389 + +2.8
6,218,389 + +1.0
6,218,389 + +2.1
6,218,389 + +1.7
6,218,390 - +1.1
6,218,390 - +0.6
6,218,390 - +3.1
6,218,392 + +1.5
6,218,393 - +0.7
6,218,487 + +2.1
6,218,501 + +4.3
6,218,501 + +2.6
6,218,501 + +2.2
6,218,501 + +2.1
6,218,502 - +2.7
6,218,502 - +2.7
6,218,512 + +2.2
6,218,513 - +1.4
6,218,516 - +2.1
6,218,550 + Pf6N2E2_5415 0.16 +2.5
6,218,783 + +2.5
6,219,191 + -0.7
6,219,191 + +0.6
6,219,954 + Pf6N2E2_5416 0.68 +0.5
6,219,954 + Pf6N2E2_5416 0.68 -0.4
6,219,954 + Pf6N2E2_5416 0.68 +1.3
6,219,954 + Pf6N2E2_5416 0.68 +1.2
6,219,954 + Pf6N2E2_5416 0.68 +0.5
6,219,954 + Pf6N2E2_5416 0.68 +1.1
6,219,954 + Pf6N2E2_5416 0.68 +1.7
6,219,954 + Pf6N2E2_5416 0.68 +1.1
6,219,954 + Pf6N2E2_5416 0.68 +1.7
6,219,955 - Pf6N2E2_5416 0.68 -0.1
6,219,955 - Pf6N2E2_5416 0.68 -0.2
6,219,955 - Pf6N2E2_5416 0.68 +1.4
6,219,955 - Pf6N2E2_5416 0.68 +0.6
6,219,987 + Pf6N2E2_5416 0.71 +2.2
6,219,987 + Pf6N2E2_5416 0.71 +0.8
6,219,987 + Pf6N2E2_5416 0.71 +1.9
6,219,988 - Pf6N2E2_5416 0.72 +2.7
6,219,988 - Pf6N2E2_5416 0.72 +0.9
6,219,988 - Pf6N2E2_5416 0.72 +0.9
6,219,988 - Pf6N2E2_5416 0.72 -0.0
6,220,020 + Pf6N2E2_5416 0.75 +0.6
6,220,021 - Pf6N2E2_5416 0.75 +0.7
6,220,021 - Pf6N2E2_5416 0.75 +1.4
6,220,021 - Pf6N2E2_5416 0.75 +2.1
6,220,211 + +1.0

Or see this region's nucleotide sequence