Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4982

Experiment: Cobalt chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4981 and Pf6N2E2_4982 are separated by 362 nucleotidesPf6N2E2_4982 and Pf6N2E2_4983 are separated by 8 nucleotidesPf6N2E2_4983 and Pf6N2E2_4984 overlap by 8 nucleotides Pf6N2E2_4981 - Nitrogen regulation protein NR(I), at 5,747,068 to 5,748,975 _4981 Pf6N2E2_4982 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-), at 5,749,338 to 5,750,687 _4982 Pf6N2E2_4983 - 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-), at 5,750,696 to 5,751,331 _4983 Pf6N2E2_4984 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 5,751,324 to 5,751,608 _4984 Position (kb) 5749 5750 5751Strain fitness (log2 ratio) -3 -2 -1 0 1at 5748.538 kb on + strand, within Pf6N2E2_4981at 5748.538 kb on + strand, within Pf6N2E2_4981at 5748.538 kb on + strand, within Pf6N2E2_4981at 5748.538 kb on + strand, within Pf6N2E2_4981at 5748.538 kb on + strand, within Pf6N2E2_4981at 5748.539 kb on - strand, within Pf6N2E2_4981at 5748.539 kb on - strand, within Pf6N2E2_4981at 5748.539 kb on - strand, within Pf6N2E2_4981at 5748.539 kb on - strand, within Pf6N2E2_4981at 5748.539 kb on - strand, within Pf6N2E2_4981at 5748.717 kb on + strand, within Pf6N2E2_4981at 5748.717 kb on + strand, within Pf6N2E2_4981at 5748.717 kb on + strand, within Pf6N2E2_4981at 5748.717 kb on + strand, within Pf6N2E2_4981at 5748.718 kb on - strand, within Pf6N2E2_4981at 5748.930 kb on + strandat 5748.978 kb on + strandat 5748.978 kb on + strandat 5748.978 kb on + strandat 5748.979 kb on - strandat 5748.979 kb on - strandat 5748.979 kb on - strandat 5749.147 kb on + strandat 5749.147 kb on + strandat 5749.147 kb on + strandat 5749.147 kb on + strandat 5749.147 kb on + strandat 5749.148 kb on - strandat 5749.148 kb on - strandat 5749.148 kb on - strandat 5749.148 kb on - strandat 5749.249 kb on + strandat 5749.249 kb on + strandat 5749.250 kb on - strandat 5749.250 kb on - strandat 5749.250 kb on - strandat 5749.250 kb on - strandat 5749.250 kb on - strandat 5749.250 kb on - strandat 5749.250 kb on - strandat 5749.250 kb on - strandat 5749.268 kb on + strandat 5749.268 kb on + strandat 5749.268 kb on + strandat 5749.268 kb on + strandat 5749.268 kb on + strandat 5749.269 kb on - strandat 5749.269 kb on - strandat 5749.269 kb on - strandat 5749.269 kb on - strandat 5749.269 kb on - strandat 5749.269 kb on - strandat 5749.269 kb on - strandat 5749.303 kb on + strandat 5749.325 kb on + strandat 5749.349 kb on + strandat 5749.349 kb on + strandat 5749.349 kb on + strandat 5749.575 kb on + strand, within Pf6N2E2_4982at 5749.575 kb on + strand, within Pf6N2E2_4982at 5749.575 kb on + strand, within Pf6N2E2_4982at 5749.599 kb on + strand, within Pf6N2E2_4982at 5749.599 kb on + strand, within Pf6N2E2_4982at 5750.174 kb on + strand, within Pf6N2E2_4982at 5750.312 kb on + strand, within Pf6N2E2_4982at 5750.312 kb on + strand, within Pf6N2E2_4982at 5750.312 kb on + strand, within Pf6N2E2_4982at 5750.312 kb on + strand, within Pf6N2E2_4982at 5750.312 kb on + strand, within Pf6N2E2_4982at 5750.312 kb on + strand, within Pf6N2E2_4982at 5750.316 kb on + strand, within Pf6N2E2_4982at 5750.316 kb on + strand, within Pf6N2E2_4982at 5750.316 kb on + strand, within Pf6N2E2_4982at 5750.579 kb on + strandat 5751.329 kb on + strandat 5751.329 kb on + strandat 5751.330 kb on - strandat 5751.330 kb on - strandat 5751.330 kb on - strandat 5751.330 kb on - strandat 5751.420 kb on + strand, within Pf6N2E2_4984at 5751.445 kb on - strand, within Pf6N2E2_4984at 5751.445 kb on - strand, within Pf6N2E2_4984at 5751.445 kb on - strand, within Pf6N2E2_4984at 5751.606 kb on + strandat 5751.634 kb on + strandat 5751.634 kb on + strandat 5751.634 kb on + strandat 5751.634 kb on + strandat 5751.635 kb on - strandat 5751.635 kb on - strandat 5751.635 kb on - strandat 5751.635 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM
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5,748,538 + Pf6N2E2_4981 0.77 +0.7
5,748,538 + Pf6N2E2_4981 0.77 +0.8
5,748,538 + Pf6N2E2_4981 0.77 -0.9
5,748,538 + Pf6N2E2_4981 0.77 -0.5
5,748,538 + Pf6N2E2_4981 0.77 +0.0
5,748,539 - Pf6N2E2_4981 0.77 +0.2
5,748,539 - Pf6N2E2_4981 0.77 -0.4
5,748,539 - Pf6N2E2_4981 0.77 -0.6
5,748,539 - Pf6N2E2_4981 0.77 +1.1
5,748,539 - Pf6N2E2_4981 0.77 -0.1
5,748,717 + Pf6N2E2_4981 0.86 +1.2
5,748,717 + Pf6N2E2_4981 0.86 +0.5
5,748,717 + Pf6N2E2_4981 0.86 -0.1
5,748,717 + Pf6N2E2_4981 0.86 -0.1
5,748,718 - Pf6N2E2_4981 0.86 +0.0
5,748,930 + -2.1
5,748,978 + -0.6
5,748,978 + -0.5
5,748,978 + +0.1
5,748,979 - +0.7
5,748,979 - -0.0
5,748,979 - +0.6
5,749,147 + -0.6
5,749,147 + +0.2
5,749,147 + +0.2
5,749,147 + -0.1
5,749,147 + +0.2
5,749,148 - +0.4
5,749,148 - -1.1
5,749,148 - +0.4
5,749,148 - -0.3
5,749,249 + +1.2
5,749,249 + +0.1
5,749,250 - -2.8
5,749,250 - +0.1
5,749,250 - -1.2
5,749,250 - -0.6
5,749,250 - -0.6
5,749,250 - -0.7
5,749,250 - -0.3
5,749,250 - -0.8
5,749,268 + +0.6
5,749,268 + +1.0
5,749,268 + +0.6
5,749,268 + +1.5
5,749,268 + -0.6
5,749,269 - -0.6
5,749,269 - -0.6
5,749,269 - +0.4
5,749,269 - -0.3
5,749,269 - +0.1
5,749,269 - +1.2
5,749,269 - +1.2
5,749,303 + -0.0
5,749,325 + +0.2
5,749,349 + -0.2
5,749,349 + -1.2
5,749,349 + -0.0
5,749,575 + Pf6N2E2_4982 0.18 +1.2
5,749,575 + Pf6N2E2_4982 0.18 +0.1
5,749,575 + Pf6N2E2_4982 0.18 -1.3
5,749,599 + Pf6N2E2_4982 0.19 +0.2
5,749,599 + Pf6N2E2_4982 0.19 +1.2
5,750,174 + Pf6N2E2_4982 0.62 +1.7
5,750,312 + Pf6N2E2_4982 0.72 -1.6
5,750,312 + Pf6N2E2_4982 0.72 -0.3
5,750,312 + Pf6N2E2_4982 0.72 -1.1
5,750,312 + Pf6N2E2_4982 0.72 -1.6
5,750,312 + Pf6N2E2_4982 0.72 -1.3
5,750,312 + Pf6N2E2_4982 0.72 -0.8
5,750,316 + Pf6N2E2_4982 0.72 -0.5
5,750,316 + Pf6N2E2_4982 0.72 -1.1
5,750,316 + Pf6N2E2_4982 0.72 -0.3
5,750,579 + +0.2
5,751,329 + -0.3
5,751,329 + +0.9
5,751,330 - -0.1
5,751,330 - +0.8
5,751,330 - -0.5
5,751,330 - +0.1
5,751,420 + Pf6N2E2_4984 0.34 +0.2
5,751,445 - Pf6N2E2_4984 0.42 -0.3
5,751,445 - Pf6N2E2_4984 0.42 +0.3
5,751,445 - Pf6N2E2_4984 0.42 -0.8
5,751,606 + -0.1
5,751,634 + +0.8
5,751,634 + +1.2
5,751,634 + -1.9
5,751,634 + -0.9
5,751,635 - +0.2
5,751,635 - +0.8
5,751,635 - +0.1
5,751,635 - +0.1

Or see this region's nucleotide sequence