Experiment: Cobalt chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3835 and Pf6N2E2_3836 are separated by 1 nucleotides Pf6N2E2_3836 and Pf6N2E2_3837 are separated by 78 nucleotides Pf6N2E2_3837 and Pf6N2E2_3838 are separated by 63 nucleotides Pf6N2E2_3838 and Pf6N2E2_3839 are separated by 9 nucleotides
Pf6N2E2_3835 - Carboxyl-terminal protease (EC 3.4.21.102), at 4,468,404 to 4,469,720
_3835
Pf6N2E2_3836 - Putative periplasmic protein YibQ, distant homology with nucleoside diphosphatase and polysaccharide deacetylase, at 4,469,722 to 4,470,501
_3836
Pf6N2E2_3837 - ABC-type amino acid transport, signal transduction systems, periplasmic component/domain, at 4,470,580 to 4,471,326
_3837
Pf6N2E2_3838 - Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-), at 4,471,390 to 4,472,160
_3838
Pf6N2E2_3839 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) , at 4,472,170 to 4,472,907
_3839
Position (kb)
4470
4471
4472 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4469.812 kb on + strand, within Pf6N2E2_3836 at 4469.812 kb on + strand, within Pf6N2E2_3836 at 4469.812 kb on + strand, within Pf6N2E2_3836 at 4469.812 kb on + strand, within Pf6N2E2_3836 at 4469.813 kb on - strand, within Pf6N2E2_3836 at 4469.868 kb on - strand, within Pf6N2E2_3836 at 4470.073 kb on + strand, within Pf6N2E2_3836 at 4470.074 kb on - strand, within Pf6N2E2_3836 at 4470.074 kb on - strand, within Pf6N2E2_3836 at 4470.075 kb on + strand, within Pf6N2E2_3836 at 4470.075 kb on + strand, within Pf6N2E2_3836 at 4470.076 kb on - strand, within Pf6N2E2_3836 at 4470.076 kb on - strand, within Pf6N2E2_3836 at 4470.076 kb on - strand, within Pf6N2E2_3836 at 4470.392 kb on + strand, within Pf6N2E2_3836 at 4470.392 kb on + strand, within Pf6N2E2_3836 at 4470.392 kb on + strand, within Pf6N2E2_3836 at 4470.392 kb on + strand, within Pf6N2E2_3836 at 4470.392 kb on + strand, within Pf6N2E2_3836 at 4470.393 kb on - strand, within Pf6N2E2_3836 at 4470.573 kb on - strand at 4470.581 kb on + strand at 4470.582 kb on - strand at 4470.692 kb on + strand, within Pf6N2E2_3837 at 4470.693 kb on - strand, within Pf6N2E2_3837 at 4470.693 kb on - strand, within Pf6N2E2_3837 at 4470.693 kb on - strand, within Pf6N2E2_3837 at 4470.896 kb on + strand, within Pf6N2E2_3837 at 4470.897 kb on - strand, within Pf6N2E2_3837 at 4470.897 kb on - strand, within Pf6N2E2_3837 at 4470.897 kb on - strand, within Pf6N2E2_3837 at 4470.911 kb on + strand, within Pf6N2E2_3837 at 4470.911 kb on + strand, within Pf6N2E2_3837 at 4470.911 kb on + strand, within Pf6N2E2_3837 at 4470.912 kb on - strand, within Pf6N2E2_3837 at 4470.912 kb on - strand, within Pf6N2E2_3837 at 4471.079 kb on + strand, within Pf6N2E2_3837 at 4471.079 kb on + strand, within Pf6N2E2_3837 at 4471.080 kb on - strand, within Pf6N2E2_3837 at 4471.080 kb on - strand, within Pf6N2E2_3837 at 4471.080 kb on - strand, within Pf6N2E2_3837 at 4471.080 kb on - strand, within Pf6N2E2_3837 at 4471.080 kb on - strand, within Pf6N2E2_3837 at 4471.102 kb on + strand, within Pf6N2E2_3837 at 4471.102 kb on + strand, within Pf6N2E2_3837 at 4471.103 kb on - strand, within Pf6N2E2_3837 at 4471.103 kb on - strand, within Pf6N2E2_3837 at 4471.103 kb on - strand, within Pf6N2E2_3837 at 4471.115 kb on + strand, within Pf6N2E2_3837 at 4471.115 kb on + strand, within Pf6N2E2_3837 at 4471.116 kb on - strand, within Pf6N2E2_3837 at 4471.122 kb on + strand, within Pf6N2E2_3837 at 4471.123 kb on - strand, within Pf6N2E2_3837 at 4471.138 kb on + strand, within Pf6N2E2_3837 at 4471.139 kb on - strand, within Pf6N2E2_3837 at 4471.217 kb on + strand, within Pf6N2E2_3837 at 4471.217 kb on + strand, within Pf6N2E2_3837 at 4471.217 kb on + strand, within Pf6N2E2_3837 at 4471.217 kb on + strand, within Pf6N2E2_3837 at 4471.217 kb on + strand, within Pf6N2E2_3837 at 4471.218 kb on - strand, within Pf6N2E2_3837 at 4471.218 kb on - strand, within Pf6N2E2_3837 at 4471.218 kb on - strand, within Pf6N2E2_3837 at 4471.218 kb on - strand, within Pf6N2E2_3837 at 4471.218 kb on - strand, within Pf6N2E2_3837 at 4471.218 kb on - strand, within Pf6N2E2_3837 at 4471.218 kb on - strand, within Pf6N2E2_3837 at 4471.218 kb on - strand, within Pf6N2E2_3837 at 4471.254 kb on + strand at 4471.254 kb on + strand at 4471.255 kb on - strand at 4471.255 kb on - strand at 4471.377 kb on + strand at 4471.377 kb on + strand at 4471.378 kb on - strand at 4471.378 kb on - strand at 4471.378 kb on - strand at 4471.421 kb on + strand at 4471.422 kb on - strand at 4471.422 kb on - strand at 4472.180 kb on + strand at 4472.181 kb on - strand at 4472.181 kb on - strand at 4472.228 kb on + strand at 4472.228 kb on + strand at 4472.229 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM remove 4,469,812 + Pf6N2E2_3836 0.12 +1.9 4,469,812 + Pf6N2E2_3836 0.12 +0.5 4,469,812 + Pf6N2E2_3836 0.12 -0.3 4,469,812 + Pf6N2E2_3836 0.12 -0.4 4,469,813 - Pf6N2E2_3836 0.12 -0.1 4,469,868 - Pf6N2E2_3836 0.19 -1.0 4,470,073 + Pf6N2E2_3836 0.45 -0.7 4,470,074 - Pf6N2E2_3836 0.45 -0.0 4,470,074 - Pf6N2E2_3836 0.45 +0.7 4,470,075 + Pf6N2E2_3836 0.45 -1.0 4,470,075 + Pf6N2E2_3836 0.45 +0.5 4,470,076 - Pf6N2E2_3836 0.45 -0.1 4,470,076 - Pf6N2E2_3836 0.45 +0.5 4,470,076 - Pf6N2E2_3836 0.45 +1.0 4,470,392 + Pf6N2E2_3836 0.86 -0.5 4,470,392 + Pf6N2E2_3836 0.86 -0.5 4,470,392 + Pf6N2E2_3836 0.86 -0.3 4,470,392 + Pf6N2E2_3836 0.86 -0.1 4,470,392 + Pf6N2E2_3836 0.86 -0.3 4,470,393 - Pf6N2E2_3836 0.86 -0.5 4,470,573 - +1.7 4,470,581 + +0.4 4,470,582 - -0.1 4,470,692 + Pf6N2E2_3837 0.15 +2.3 4,470,693 - Pf6N2E2_3837 0.15 +0.4 4,470,693 - Pf6N2E2_3837 0.15 -0.4 4,470,693 - Pf6N2E2_3837 0.15 -2.6 4,470,896 + Pf6N2E2_3837 0.42 -1.0 4,470,897 - Pf6N2E2_3837 0.42 -0.7 4,470,897 - Pf6N2E2_3837 0.42 -0.1 4,470,897 - Pf6N2E2_3837 0.42 -0.4 4,470,911 + Pf6N2E2_3837 0.44 -1.1 4,470,911 + Pf6N2E2_3837 0.44 -1.3 4,470,911 + Pf6N2E2_3837 0.44 -0.1 4,470,912 - Pf6N2E2_3837 0.44 -0.6 4,470,912 - Pf6N2E2_3837 0.44 +0.2 4,471,079 + Pf6N2E2_3837 0.67 -1.2 4,471,079 + Pf6N2E2_3837 0.67 -0.8 4,471,080 - Pf6N2E2_3837 0.67 -0.1 4,471,080 - Pf6N2E2_3837 0.67 -1.1 4,471,080 - Pf6N2E2_3837 0.67 -2.3 4,471,080 - Pf6N2E2_3837 0.67 -1.2 4,471,080 - Pf6N2E2_3837 0.67 +0.3 4,471,102 + Pf6N2E2_3837 0.70 -1.6 4,471,102 + Pf6N2E2_3837 0.70 -1.8 4,471,103 - Pf6N2E2_3837 0.70 -0.7 4,471,103 - Pf6N2E2_3837 0.70 -0.8 4,471,103 - Pf6N2E2_3837 0.70 -2.1 4,471,115 + Pf6N2E2_3837 0.72 -0.8 4,471,115 + Pf6N2E2_3837 0.72 +0.9 4,471,116 - Pf6N2E2_3837 0.72 -0.2 4,471,122 + Pf6N2E2_3837 0.73 -0.4 4,471,123 - Pf6N2E2_3837 0.73 -0.5 4,471,138 + Pf6N2E2_3837 0.75 -0.1 4,471,139 - Pf6N2E2_3837 0.75 -1.8 4,471,217 + Pf6N2E2_3837 0.85 -1.1 4,471,217 + Pf6N2E2_3837 0.85 -0.4 4,471,217 + Pf6N2E2_3837 0.85 -0.3 4,471,217 + Pf6N2E2_3837 0.85 -1.3 4,471,217 + Pf6N2E2_3837 0.85 -1.0 4,471,218 - Pf6N2E2_3837 0.85 -1.2 4,471,218 - Pf6N2E2_3837 0.85 -1.6 4,471,218 - Pf6N2E2_3837 0.85 -2.3 4,471,218 - Pf6N2E2_3837 0.85 -1.1 4,471,218 - Pf6N2E2_3837 0.85 -0.0 4,471,218 - Pf6N2E2_3837 0.85 -1.4 4,471,218 - Pf6N2E2_3837 0.85 -1.8 4,471,218 - Pf6N2E2_3837 0.85 -0.1 4,471,254 + -1.3 4,471,254 + -0.8 4,471,255 - -1.8 4,471,255 - -0.8 4,471,377 + -1.3 4,471,377 + -3.3 4,471,378 - +1.1 4,471,378 - +1.2 4,471,378 - +1.9 4,471,421 + -1.1 4,471,422 - -2.8 4,471,422 - -1.5 4,472,180 + +1.1 4,472,181 - -1.2 4,472,181 - -2.9 4,472,228 + +0.3 4,472,228 + +0.9 4,472,229 - -1.0
Or see this region's nucleotide sequence