Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS08530 and HSERO_RS08535 are separated by 76 nucleotides HSERO_RS08535 and HSERO_RS08540 are separated by 9 nucleotides HSERO_RS08540 and HSERO_RS08545 overlap by 4 nucleotides
HSERO_RS08530: HSERO_RS08530 - glycine/betaine ABC transporter permease, at 1,943,838 to 1,944,551
_RS08530
HSERO_RS08535: HSERO_RS08535 - glycine/betaine ABC transporter substrate-binding protein, at 1,944,628 to 1,945,548
_RS08535
HSERO_RS08540: HSERO_RS08540 - choline ABC transporter permease, at 1,945,558 to 1,946,208
_RS08540
HSERO_RS08545: HSERO_RS08545 - glycine/betaine ABC transporter ATP-binding protein, at 1,946,205 to 1,947,338
_RS08545
Position (kb) 1944
1945
1946 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1943.883 kb on - strand at 1943.914 kb on + strand, within HSERO_RS08530 at 1944.196 kb on - strand, within HSERO_RS08530 at 1944.224 kb on - strand, within HSERO_RS08530 at 1944.250 kb on - strand, within HSERO_RS08530 at 1944.305 kb on - strand, within HSERO_RS08530 at 1944.658 kb on - strand at 1944.677 kb on + strand at 1944.778 kb on + strand, within HSERO_RS08535 at 1945.056 kb on + strand, within HSERO_RS08535 at 1945.115 kb on - strand, within HSERO_RS08535 at 1945.242 kb on + strand, within HSERO_RS08535 at 1945.242 kb on + strand, within HSERO_RS08535 at 1945.242 kb on + strand, within HSERO_RS08535 at 1945.242 kb on + strand, within HSERO_RS08535 at 1945.242 kb on + strand, within HSERO_RS08535 at 1945.550 kb on - strand at 1945.995 kb on + strand, within HSERO_RS08540 at 1946.214 kb on - strand at 1946.225 kb on + strand at 1946.266 kb on - strand at 1946.288 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 1,943,883 - -1.8 1,943,914 + HSERO_RS08530 0.11 -3.1 1,944,196 - HSERO_RS08530 0.50 -2.1 1,944,224 - HSERO_RS08530 0.54 -2.0 1,944,250 - HSERO_RS08530 0.58 -1.4 1,944,305 - HSERO_RS08530 0.65 -2.4 1,944,658 - -1.2 1,944,677 + -0.9 1,944,778 + HSERO_RS08535 0.16 -1.1 1,945,056 + HSERO_RS08535 0.46 -2.2 1,945,115 - HSERO_RS08535 0.53 -2.9 1,945,242 + HSERO_RS08535 0.67 -3.5 1,945,242 + HSERO_RS08535 0.67 -2.9 1,945,242 + HSERO_RS08535 0.67 -2.7 1,945,242 + HSERO_RS08535 0.67 -1.6 1,945,242 + HSERO_RS08535 0.67 -1.2 1,945,550 - -1.6 1,945,995 + HSERO_RS08540 0.67 -1.7 1,946,214 - -2.5 1,946,225 + -2.0 1,946,266 - -1.7 1,946,288 - -1.1
Or see this region's nucleotide sequence