Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS04090

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS04085 and HSERO_RS04090 are separated by 162 nucleotidesHSERO_RS04090 and HSERO_RS04095 are separated by 51 nucleotides HSERO_RS04085: HSERO_RS04085 - twitching motility protein PilT, at 893,466 to 894,563 _RS04085 HSERO_RS04090: HSERO_RS04090 - molecular chaperone Tir, at 894,726 to 895,127 _RS04090 HSERO_RS04095: HSERO_RS04095 - hypothetical protein, at 895,179 to 896,624 _RS04095 Position (kb) 894 895 896Strain fitness (log2 ratio) -1 0 1 2 3at 894.656 kb on - strandat 894.742 kb on + strandat 894.801 kb on + strand, within HSERO_RS04090at 894.994 kb on + strand, within HSERO_RS04090at 895.000 kb on - strand, within HSERO_RS04090at 895.007 kb on - strand, within HSERO_RS04090at 895.069 kb on + strand, within HSERO_RS04090at 895.398 kb on + strand, within HSERO_RS04095at 895.443 kb on + strand, within HSERO_RS04095at 895.674 kb on - strand, within HSERO_RS04095at 896.064 kb on + strand, within HSERO_RS04095

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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894,656 - +0.3
894,742 + +1.4
894,801 + HSERO_RS04090 0.19 -1.4
894,994 + HSERO_RS04090 0.67 +0.6
895,000 - HSERO_RS04090 0.68 +2.9
895,007 - HSERO_RS04090 0.70 +0.3
895,069 + HSERO_RS04090 0.85 +0.6
895,398 + HSERO_RS04095 0.15 +0.3
895,443 + HSERO_RS04095 0.18 -0.2
895,674 - HSERO_RS04095 0.34 +0.3
896,064 + HSERO_RS04095 0.61 +0.3

Or see this region's nucleotide sequence