Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04060 and HSERO_RS04065 are separated by 74 nucleotides HSERO_RS04065 and HSERO_RS04070 are separated by 90 nucleotides HSERO_RS04070 and HSERO_RS04075 overlap by 4 nucleotides
HSERO_RS04060: HSERO_RS04060 - type II secretion system protein F, at 889,072 to 890,145
_RS04060
HSERO_RS04065: HSERO_RS04065 - pilus biosynthesis protein PilS, at 890,220 to 890,771
_RS04065
HSERO_RS04070: HSERO_RS04070 - hypothetical protein, at 890,862 to 891,359
_RS04070
HSERO_RS04075: HSERO_RS04075 - type IV prepilin PilV protein, at 891,356 to 892,759
_RS04075
Position (kb) 890
891
892 Strain fitness (log2 ratio) -2
-1
0
1 at 889.867 kb on + strand, within HSERO_RS04060 at 890.125 kb on + strand at 890.251 kb on + strand at 890.272 kb on + strand at 890.378 kb on + strand, within HSERO_RS04065 at 890.431 kb on - strand, within HSERO_RS04065 at 890.456 kb on + strand, within HSERO_RS04065 at 890.610 kb on - strand, within HSERO_RS04065 at 890.612 kb on + strand, within HSERO_RS04065 at 890.761 kb on - strand at 890.848 kb on + strand at 890.853 kb on - strand at 891.029 kb on + strand, within HSERO_RS04070 at 891.067 kb on + strand, within HSERO_RS04070 at 891.075 kb on - strand, within HSERO_RS04070 at 891.124 kb on - strand, within HSERO_RS04070 at 891.163 kb on + strand, within HSERO_RS04070 at 891.343 kb on - strand at 891.384 kb on + strand at 891.553 kb on + strand, within HSERO_RS04075 at 891.610 kb on + strand, within HSERO_RS04075 at 891.646 kb on + strand, within HSERO_RS04075 at 892.161 kb on + strand, within HSERO_RS04075 at 892.169 kb on - strand, within HSERO_RS04075 at 892.169 kb on - strand, within HSERO_RS04075 at 892.245 kb on + strand, within HSERO_RS04075 at 892.309 kb on - strand, within HSERO_RS04075
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 889,867 + HSERO_RS04060 0.74 +0.4 890,125 + -0.1 890,251 + -2.4 890,272 + -0.7 890,378 + HSERO_RS04065 0.29 -0.4 890,431 - HSERO_RS04065 0.38 +0.0 890,456 + HSERO_RS04065 0.43 -0.3 890,610 - HSERO_RS04065 0.71 -0.7 890,612 + HSERO_RS04065 0.71 -1.7 890,761 - +0.9 890,848 + +0.3 890,853 - -0.1 891,029 + HSERO_RS04070 0.34 +0.1 891,067 + HSERO_RS04070 0.41 -0.5 891,075 - HSERO_RS04070 0.43 +0.3 891,124 - HSERO_RS04070 0.53 +1.4 891,163 + HSERO_RS04070 0.60 +1.5 891,343 - -0.9 891,384 + -0.1 891,553 + HSERO_RS04075 0.14 +0.3 891,610 + HSERO_RS04075 0.18 -0.1 891,646 + HSERO_RS04075 0.21 +0.3 892,161 + HSERO_RS04075 0.57 +0.4 892,169 - HSERO_RS04075 0.58 +0.5 892,169 - HSERO_RS04075 0.58 +0.4 892,245 + HSERO_RS04075 0.63 -0.4 892,309 - HSERO_RS04075 0.68 +0.9
Or see this region's nucleotide sequence