Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02872 and SMc02873 are separated by 268 nucleotides SMc02873 and SMc02874 are separated by 55 nucleotides
SMc02872: SMc02872 - ABC transporter for N-Acetyl-D-glucosamine, permease protein 1 <small>(from data)</small>, at 227,704 to 228,651
SMc02872
SMc02873: SMc02873 - N-Acetyl-D-glucosamine ABC transport system, periplasmic substrate-binding component <small>(from data)</small>, at 228,920 to 230,179
SMc02873
SMc02874: SMc02874 - N-acetylmuramic acid 6-phosphate etherase, at 230,235 to 231,131
SMc02874
Position (kb) 228
229
230
231 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 228.080 kb on + strand, within SMc02872 at 228.105 kb on + strand, within SMc02872 at 228.106 kb on - strand, within SMc02872 at 228.107 kb on + strand, within SMc02872 at 228.107 kb on + strand, within SMc02872 at 228.107 kb on + strand, within SMc02872 at 228.108 kb on - strand, within SMc02872 at 228.108 kb on - strand, within SMc02872 at 228.206 kb on + strand, within SMc02872 at 228.206 kb on + strand, within SMc02872 at 228.207 kb on - strand, within SMc02872 at 228.207 kb on - strand, within SMc02872 at 228.291 kb on + strand, within SMc02872 at 228.302 kb on + strand, within SMc02872 at 228.506 kb on + strand, within SMc02872 at 228.506 kb on + strand, within SMc02872 at 228.506 kb on + strand, within SMc02872 at 228.507 kb on - strand, within SMc02872 at 228.626 kb on + strand at 228.626 kb on + strand at 228.626 kb on + strand at 228.626 kb on + strand at 228.627 kb on - strand at 228.627 kb on - strand at 228.627 kb on - strand at 228.922 kb on - strand at 229.040 kb on - strand at 229.066 kb on - strand, within SMc02873 at 229.185 kb on + strand, within SMc02873 at 229.294 kb on + strand, within SMc02873 at 229.295 kb on - strand, within SMc02873 at 229.295 kb on - strand, within SMc02873 at 229.295 kb on - strand, within SMc02873 at 229.296 kb on + strand, within SMc02873 at 229.296 kb on + strand, within SMc02873 at 229.296 kb on + strand, within SMc02873 at 229.296 kb on + strand, within SMc02873 at 229.296 kb on + strand, within SMc02873 at 229.297 kb on - strand, within SMc02873 at 229.297 kb on - strand, within SMc02873 at 229.297 kb on - strand, within SMc02873 at 229.297 kb on - strand, within SMc02873 at 229.441 kb on - strand, within SMc02873 at 229.471 kb on - strand, within SMc02873 at 229.575 kb on + strand, within SMc02873 at 229.575 kb on + strand, within SMc02873 at 229.650 kb on + strand, within SMc02873 at 229.650 kb on + strand, within SMc02873 at 229.650 kb on + strand, within SMc02873 at 229.650 kb on + strand, within SMc02873 at 229.650 kb on + strand, within SMc02873 at 229.651 kb on - strand, within SMc02873 at 229.651 kb on - strand, within SMc02873 at 229.651 kb on - strand, within SMc02873 at 229.747 kb on - strand, within SMc02873 at 229.887 kb on + strand, within SMc02873 at 229.972 kb on + strand, within SMc02873 at 230.001 kb on - strand, within SMc02873 at 230.196 kb on - strand at 230.196 kb on - strand at 230.196 kb on - strand at 230.229 kb on + strand at 230.302 kb on + strand at 230.403 kb on + strand, within SMc02874 at 230.404 kb on - strand, within SMc02874 at 230.702 kb on - strand, within SMc02874 at 230.800 kb on + strand, within SMc02874 at 230.868 kb on + strand, within SMc02874 at 230.868 kb on + strand, within SMc02874 at 230.868 kb on + strand, within SMc02874 at 230.869 kb on - strand, within SMc02874 at 230.869 kb on - strand, within SMc02874 at 230.875 kb on + strand, within SMc02874
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 228,080 + SMc02872 0.40 -0.7 228,105 + SMc02872 0.42 -0.2 228,106 - SMc02872 0.42 -0.9 228,107 + SMc02872 0.43 -0.5 228,107 + SMc02872 0.43 -0.5 228,107 + SMc02872 0.43 -1.3 228,108 - SMc02872 0.43 +0.3 228,108 - SMc02872 0.43 -0.1 228,206 + SMc02872 0.53 -0.5 228,206 + SMc02872 0.53 +0.6 228,207 - SMc02872 0.53 -0.1 228,207 - SMc02872 0.53 +0.0 228,291 + SMc02872 0.62 +0.9 228,302 + SMc02872 0.63 -0.8 228,506 + SMc02872 0.85 -0.5 228,506 + SMc02872 0.85 +0.0 228,506 + SMc02872 0.85 -0.7 228,507 - SMc02872 0.85 +2.7 228,626 + +0.6 228,626 + +1.1 228,626 + -3.0 228,626 + +0.5 228,627 - +1.5 228,627 - +0.2 228,627 - +0.0 228,922 - -1.6 229,040 - -0.5 229,066 - SMc02873 0.12 +0.2 229,185 + SMc02873 0.21 -0.3 229,294 + SMc02873 0.30 -0.5 229,295 - SMc02873 0.30 +1.2 229,295 - SMc02873 0.30 +0.5 229,295 - SMc02873 0.30 +2.6 229,296 + SMc02873 0.30 +0.6 229,296 + SMc02873 0.30 +2.0 229,296 + SMc02873 0.30 +0.6 229,296 + SMc02873 0.30 +0.8 229,296 + SMc02873 0.30 -2.1 229,297 - SMc02873 0.30 +0.8 229,297 - SMc02873 0.30 +0.3 229,297 - SMc02873 0.30 -1.5 229,297 - SMc02873 0.30 +0.7 229,441 - SMc02873 0.41 +0.3 229,471 - SMc02873 0.44 +0.2 229,575 + SMc02873 0.52 +1.0 229,575 + SMc02873 0.52 +1.3 229,650 + SMc02873 0.58 -0.3 229,650 + SMc02873 0.58 +0.7 229,650 + SMc02873 0.58 -2.5 229,650 + SMc02873 0.58 -0.6 229,650 + SMc02873 0.58 -0.6 229,651 - SMc02873 0.58 +0.8 229,651 - SMc02873 0.58 +0.8 229,651 - SMc02873 0.58 +1.7 229,747 - SMc02873 0.66 -0.9 229,887 + SMc02873 0.77 -0.8 229,972 + SMc02873 0.83 -1.3 230,001 - SMc02873 0.86 -0.8 230,196 - +0.0 230,196 - +0.5 230,196 - +1.3 230,229 + +0.0 230,302 + +0.6 230,403 + SMc02874 0.19 -0.9 230,404 - SMc02874 0.19 +2.6 230,702 - SMc02874 0.52 +0.0 230,800 + SMc02874 0.63 -0.9 230,868 + SMc02874 0.71 -0.2 230,868 + SMc02874 0.71 +0.3 230,868 + SMc02874 0.71 +0.4 230,869 - SMc02874 0.71 +0.4 230,869 - SMc02874 0.71 +2.4 230,875 + SMc02874 0.71 -0.8
Or see this region's nucleotide sequence