Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02255 and SMc02256 are separated by 138 nucleotides SMc02256 and SMc02257 overlap by 11 nucleotides SMc02257 and SMc02258 overlap by 4 nucleotides
SMc02255: SMc02255 - quinol oxidase subunit I transmembrane protein, at 619,688 to 621,169
SMc02255
SMc02256: SMc02256 - hippurate hydrolase, at 621,308 to 622,489
SMc02256
SMc02257: SMc02257 - ABC transporter permease, at 622,479 to 623,303
SMc02257
SMc02258: SMc02258 - ABC transporter permease, at 623,300 to 624,025
SMc02258
Position (kb) 621
622
623 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 620.869 kb on - strand, within SMc02255 at 621.325 kb on - strand at 621.469 kb on + strand, within SMc02256 at 621.469 kb on + strand, within SMc02256 at 621.469 kb on + strand, within SMc02256 at 621.471 kb on + strand, within SMc02256 at 621.471 kb on + strand, within SMc02256 at 621.471 kb on + strand, within SMc02256 at 621.472 kb on - strand, within SMc02256 at 621.472 kb on - strand, within SMc02256 at 621.472 kb on - strand, within SMc02256 at 621.594 kb on + strand, within SMc02256 at 621.606 kb on + strand, within SMc02256 at 621.707 kb on + strand, within SMc02256 at 621.708 kb on - strand, within SMc02256 at 622.210 kb on - strand, within SMc02256 at 622.210 kb on - strand, within SMc02256 at 622.552 kb on + strand at 622.552 kb on + strand at 622.553 kb on - strand at 622.553 kb on - strand at 622.553 kb on - strand at 622.553 kb on - strand at 622.582 kb on + strand, within SMc02257 at 622.583 kb on - strand, within SMc02257 at 622.591 kb on + strand, within SMc02257 at 622.591 kb on + strand, within SMc02257 at 622.624 kb on + strand, within SMc02257 at 622.625 kb on - strand, within SMc02257 at 622.625 kb on - strand, within SMc02257 at 622.835 kb on - strand, within SMc02257 at 622.892 kb on - strand, within SMc02257 at 622.952 kb on - strand, within SMc02257 at 622.965 kb on + strand, within SMc02257 at 622.966 kb on - strand, within SMc02257 at 622.966 kb on - strand, within SMc02257 at 622.966 kb on - strand, within SMc02257 at 623.001 kb on - strand, within SMc02257 at 623.001 kb on - strand, within SMc02257 at 623.272 kb on + strand at 623.272 kb on + strand at 623.273 kb on - strand at 623.273 kb on - strand at 623.382 kb on + strand, within SMc02258 at 623.382 kb on + strand, within SMc02258 at 623.382 kb on + strand, within SMc02258 at 623.383 kb on - strand, within SMc02258 at 623.415 kb on + strand, within SMc02258 at 623.416 kb on - strand, within SMc02258
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 620,869 - SMc02255 0.80 -0.3 621,325 - -0.8 621,469 + SMc02256 0.14 +0.8 621,469 + SMc02256 0.14 -1.4 621,469 + SMc02256 0.14 +0.5 621,471 + SMc02256 0.14 -0.6 621,471 + SMc02256 0.14 -1.3 621,471 + SMc02256 0.14 -2.4 621,472 - SMc02256 0.14 +0.2 621,472 - SMc02256 0.14 -0.7 621,472 - SMc02256 0.14 -0.3 621,594 + SMc02256 0.24 +0.5 621,606 + SMc02256 0.25 -0.3 621,707 + SMc02256 0.34 +0.4 621,708 - SMc02256 0.34 -2.5 622,210 - SMc02256 0.76 +0.2 622,210 - SMc02256 0.76 -0.6 622,552 + -0.2 622,552 + -1.3 622,553 - +0.4 622,553 - -1.9 622,553 - -2.0 622,553 - -1.1 622,582 + SMc02257 0.12 -2.2 622,583 - SMc02257 0.13 +0.3 622,591 + SMc02257 0.14 -1.6 622,591 + SMc02257 0.14 +0.2 622,624 + SMc02257 0.18 +1.1 622,625 - SMc02257 0.18 +0.0 622,625 - SMc02257 0.18 +1.1 622,835 - SMc02257 0.43 +1.6 622,892 - SMc02257 0.50 -3.0 622,952 - SMc02257 0.57 -2.4 622,965 + SMc02257 0.59 -0.2 622,966 - SMc02257 0.59 -0.0 622,966 - SMc02257 0.59 +0.8 622,966 - SMc02257 0.59 +0.3 623,001 - SMc02257 0.63 +0.3 623,001 - SMc02257 0.63 +1.5 623,272 + +0.6 623,272 + +0.9 623,273 - +1.4 623,273 - -0.5 623,382 + SMc02258 0.11 +0.0 623,382 + SMc02258 0.11 -0.2 623,382 + SMc02258 0.11 +1.7 623,383 - SMc02258 0.11 -1.7 623,415 + SMc02258 0.16 -0.8 623,416 - SMc02258 0.16 -0.6
Or see this region's nucleotide sequence