Strain Fitness in Sinorhizobium meliloti 1021 around SMc01974

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01973 and SMc01974 are separated by 123 nucleotidesSMc01974 and SMc01975 are separated by 262 nucleotidesSMc01975 and SMc01976 overlap by 4 nucleotides SMc01973: SMc01973 - glutamine synthetase, at 2,697,105 to 2,698,472 SMc01973 SMc01974: SMc01974 - transcriptional regulator, at 2,698,596 to 2,699,288 SMc01974 SMc01975: SMc01975 - transcriptional regulator, at 2,699,551 to 2,700,267 SMc01975 SMc01976: SMc01976 - hypothetical protein, at 2,700,264 to 2,701,436 SMc01976 Position (kb) 2698 2699 2700Strain fitness (log2 ratio) -2 -1 0 1 2at 2697.982 kb on + strand, within SMc01973at 2698.030 kb on + strand, within SMc01973at 2698.098 kb on + strand, within SMc01973at 2698.403 kb on + strandat 2698.404 kb on - strandat 2698.411 kb on - strandat 2698.472 kb on + strandat 2698.514 kb on + strandat 2698.514 kb on + strandat 2698.515 kb on - strandat 2698.518 kb on + strandat 2698.551 kb on - strandat 2698.551 kb on - strandat 2698.638 kb on - strandat 2698.653 kb on + strandat 2698.754 kb on + strand, within SMc01974at 2698.937 kb on - strand, within SMc01974at 2699.037 kb on + strand, within SMc01974at 2699.037 kb on + strand, within SMc01974at 2699.038 kb on - strand, within SMc01974at 2699.140 kb on - strand, within SMc01974at 2699.140 kb on - strand, within SMc01974at 2699.286 kb on + strandat 2699.497 kb on + strandat 2699.509 kb on - strandat 2699.770 kb on - strand, within SMc01975at 2699.770 kb on - strand, within SMc01975at 2699.785 kb on + strand, within SMc01975at 2699.786 kb on - strand, within SMc01975at 2699.786 kb on - strand, within SMc01975at 2699.821 kb on - strand, within SMc01975at 2699.821 kb on - strand, within SMc01975at 2700.038 kb on - strand, within SMc01975

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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2,697,982 + SMc01973 0.64 -1.0
2,698,030 + SMc01973 0.68 -1.9
2,698,098 + SMc01973 0.73 +1.1
2,698,403 + +0.1
2,698,404 - +0.3
2,698,411 - -0.2
2,698,472 + +0.6
2,698,514 + +1.4
2,698,514 + +0.2
2,698,515 - -0.8
2,698,518 + +0.2
2,698,551 - +1.8
2,698,551 - -0.3
2,698,638 - +0.1
2,698,653 + +0.5
2,698,754 + SMc01974 0.23 -0.1
2,698,937 - SMc01974 0.49 -2.6
2,699,037 + SMc01974 0.64 -1.2
2,699,037 + SMc01974 0.64 -0.2
2,699,038 - SMc01974 0.64 +0.3
2,699,140 - SMc01974 0.78 -0.7
2,699,140 - SMc01974 0.78 -1.9
2,699,286 + +0.3
2,699,497 + +1.0
2,699,509 - +0.1
2,699,770 - SMc01975 0.31 +0.6
2,699,770 - SMc01975 0.31 -0.9
2,699,785 + SMc01975 0.33 -0.8
2,699,786 - SMc01975 0.33 +0.6
2,699,786 - SMc01975 0.33 +0.9
2,699,821 - SMc01975 0.38 +0.6
2,699,821 - SMc01975 0.38 +2.6
2,700,038 - SMc01975 0.68 +0.6

Or see this region's nucleotide sequence