Strain Fitness in Sinorhizobium meliloti 1021 around SMc01905

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01904 and SMc01905 are separated by 473 nucleotidesSMc01905 and SMc01906 are separated by 221 nucleotidesSMc01906 and SMc01907 are separated by 230 nucleotides SMc01904: SMc01904 - ATP-dependent protease ATP-binding subunit ClpX, at 1,363,000 to 1,364,277 SMc01904 SMc01905: SMc01905 - ATP-dependent protease LA protein, at 1,364,751 to 1,367,171 SMc01905 SMc01906: SMc01906 - histone-like protein, at 1,367,393 to 1,367,665 SMc01906 SMc01907: SMc01907 - hypothetical protein, at 1,367,896 to 1,370,085 SMc01907 Position (kb) 1364 1365 1366 1367 1368Strain fitness (log2 ratio) -2 -1 0 1 2at 1364.231 kb on - strandat 1364.231 kb on - strandat 1364.236 kb on + strandat 1364.236 kb on + strandat 1364.497 kb on + strandat 1364.497 kb on + strandat 1364.498 kb on - strandat 1364.542 kb on + strandat 1364.543 kb on - strandat 1364.598 kb on + strandat 1364.598 kb on + strandat 1364.599 kb on - strandat 1367.094 kb on - strandat 1367.191 kb on + strandat 1367.191 kb on + strandat 1367.191 kb on + strandat 1367.191 kb on + strandat 1367.192 kb on - strandat 1367.350 kb on + strandat 1367.813 kb on - strandat 1367.976 kb on - strandat 1367.976 kb on - strandat 1367.976 kb on - strandat 1368.091 kb on + strandat 1368.092 kb on - strandat 1368.092 kb on - strandat 1368.092 kb on - strandat 1368.163 kb on - strand, within SMc01907

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,364,231 - +1.1
1,364,231 - -1.5
1,364,236 + -1.7
1,364,236 + -1.5
1,364,497 + -0.8
1,364,497 + +0.1
1,364,498 - -1.2
1,364,542 + +1.3
1,364,543 - +0.0
1,364,598 + -0.2
1,364,598 + -1.8
1,364,599 - +1.8
1,367,094 - -1.9
1,367,191 + +0.2
1,367,191 + +2.3
1,367,191 + -1.4
1,367,191 + -0.1
1,367,192 - +0.8
1,367,350 + +2.3
1,367,813 - +2.6
1,367,976 - +1.9
1,367,976 - +1.7
1,367,976 - +2.6
1,368,091 + +2.1
1,368,092 - +2.5
1,368,092 - +2.2
1,368,092 - +2.7
1,368,163 - SMc01907 0.12 +2.0

Or see this region's nucleotide sequence