Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00830 and SMc00831 are separated by 1 nucleotides SMc00831 and SMc00832 are separated by 199 nucleotides
SMc00830: SMc00830 - hypothetical protein, at 851,078 to 852,346
SMc00830
SMc00831: SMc00831 - transcriptional regulator, at 852,348 to 853,244
SMc00831
SMc00832: SMc00832 - D-lactate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6) <small>(from data)</small>, at 853,444 to 854,883
SMc00832
Position (kb) 852
853
854 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 851.351 kb on + strand, within SMc00830 at 851.351 kb on + strand, within SMc00830 at 851.351 kb on - strand, within SMc00830 at 851.352 kb on - strand, within SMc00830 at 851.352 kb on - strand, within SMc00830 at 851.474 kb on - strand, within SMc00830 at 851.525 kb on + strand, within SMc00830 at 851.672 kb on + strand, within SMc00830 at 851.885 kb on + strand, within SMc00830 at 851.886 kb on - strand, within SMc00830 at 851.886 kb on - strand, within SMc00830 at 851.886 kb on - strand, within SMc00830 at 851.889 kb on - strand, within SMc00830 at 851.889 kb on - strand, within SMc00830 at 851.889 kb on - strand, within SMc00830 at 851.889 kb on - strand, within SMc00830 at 851.942 kb on + strand, within SMc00830 at 852.050 kb on - strand, within SMc00830 at 852.189 kb on - strand, within SMc00830 at 852.189 kb on - strand, within SMc00830 at 852.192 kb on - strand, within SMc00830 at 852.344 kb on + strand at 852.349 kb on + strand at 852.349 kb on + strand at 852.349 kb on + strand at 852.350 kb on - strand at 852.350 kb on - strand at 852.350 kb on - strand at 852.361 kb on + strand at 852.361 kb on + strand at 852.376 kb on + strand at 852.733 kb on + strand, within SMc00831 at 852.734 kb on - strand, within SMc00831 at 853.000 kb on + strand, within SMc00831 at 853.000 kb on + strand, within SMc00831 at 853.000 kb on + strand, within SMc00831 at 853.001 kb on - strand, within SMc00831 at 853.001 kb on - strand, within SMc00831 at 853.001 kb on - strand, within SMc00831 at 853.048 kb on + strand, within SMc00831 at 853.048 kb on + strand, within SMc00831 at 853.048 kb on + strand, within SMc00831 at 853.049 kb on - strand, within SMc00831 at 853.049 kb on - strand, within SMc00831 at 853.190 kb on + strand at 853.190 kb on + strand at 853.191 kb on - strand at 853.191 kb on - strand at 853.191 kb on - strand at 853.311 kb on - strand at 853.312 kb on + strand at 853.313 kb on - strand at 853.313 kb on - strand at 853.352 kb on + strand at 853.352 kb on + strand at 853.352 kb on + strand at 853.353 kb on - strand at 853.353 kb on - strand at 853.353 kb on - strand at 853.663 kb on + strand, within SMc00832 at 853.663 kb on + strand, within SMc00832 at 853.663 kb on + strand, within SMc00832 at 853.676 kb on - strand, within SMc00832 at 853.839 kb on + strand, within SMc00832 at 853.873 kb on + strand, within SMc00832 at 853.910 kb on + strand, within SMc00832 at 853.958 kb on - strand, within SMc00832 at 853.958 kb on - strand, within SMc00832 at 853.965 kb on + strand, within SMc00832 at 854.053 kb on + strand, within SMc00832
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 851,351 + SMc00830 0.22 +0.7 851,351 + SMc00830 0.22 -0.4 851,351 - SMc00830 0.22 +0.8 851,352 - SMc00830 0.22 +2.0 851,352 - SMc00830 0.22 -0.9 851,474 - SMc00830 0.31 +0.4 851,525 + SMc00830 0.35 +0.1 851,672 + SMc00830 0.47 -1.5 851,885 + SMc00830 0.64 -0.5 851,886 - SMc00830 0.64 -0.1 851,886 - SMc00830 0.64 +0.1 851,886 - SMc00830 0.64 -1.8 851,889 - SMc00830 0.64 -1.1 851,889 - SMc00830 0.64 -0.1 851,889 - SMc00830 0.64 +0.6 851,889 - SMc00830 0.64 -0.3 851,942 + SMc00830 0.68 +0.7 852,050 - SMc00830 0.77 +1.0 852,189 - SMc00830 0.88 -0.4 852,189 - SMc00830 0.88 -1.4 852,192 - SMc00830 0.88 +1.5 852,344 + -0.7 852,349 + -1.1 852,349 + -0.9 852,349 + -0.2 852,350 - -1.5 852,350 - +1.6 852,350 - +0.3 852,361 + -0.5 852,361 + -0.0 852,376 + +0.2 852,733 + SMc00831 0.43 +0.5 852,734 - SMc00831 0.43 -0.6 853,000 + SMc00831 0.73 -1.4 853,000 + SMc00831 0.73 +0.3 853,000 + SMc00831 0.73 -0.9 853,001 - SMc00831 0.73 +3.0 853,001 - SMc00831 0.73 +0.2 853,001 - SMc00831 0.73 +2.3 853,048 + SMc00831 0.78 +1.1 853,048 + SMc00831 0.78 +1.4 853,048 + SMc00831 0.78 +1.1 853,049 - SMc00831 0.78 +0.9 853,049 - SMc00831 0.78 +2.4 853,190 + +0.1 853,190 + +0.2 853,191 - -0.7 853,191 - -0.9 853,191 - +1.4 853,311 - +0.8 853,312 + -0.7 853,313 - +0.5 853,313 - +0.8 853,352 + +0.1 853,352 + -0.4 853,352 + +1.5 853,353 - +0.0 853,353 - +1.1 853,353 - -0.7 853,663 + SMc00832 0.15 -1.3 853,663 + SMc00832 0.15 -2.8 853,663 + SMc00832 0.15 -0.0 853,676 - SMc00832 0.16 +0.1 853,839 + SMc00832 0.27 +0.3 853,873 + SMc00832 0.30 +1.3 853,910 + SMc00832 0.32 -1.2 853,958 - SMc00832 0.36 -1.2 853,958 - SMc00832 0.36 +0.3 853,965 + SMc00832 0.36 +0.9 854,053 + SMc00832 0.42 -1.7
Or see this region's nucleotide sequence