Strain Fitness in Sinorhizobium meliloti 1021 around SMa1646

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1644 and SMa5010 are separated by 177 nucleotidesSMa5010 and SMa1646 are separated by 363 nucleotidesSMa1646 and SMa1647 overlap by 4 nucleotidesSMa1647 and SMa1649 overlap by 11 nucleotides SMa1644: SMa1644 - ABC transporter permease, at 915,768 to 916,487 SMa1644 SMa5010: SMa5010 - hypothetical protein, at 916,665 to 917,003 SMa5010 SMa1646: SMa1646 - ABC transporter ATP-binding protein, at 917,367 to 918,389 SMa1646 SMa1647: SMa1647 - ABC transporter ATP-binding protein, at 918,386 to 919,381 SMa1647 SMa1649: SMa1649 - ABC transporter permease, at 919,371 to 920,282 SMa1649 Position (kb) 917 918 919Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 916.451 kb on - strandat 916.453 kb on + strandat 916.454 kb on - strandat 916.454 kb on - strandat 916.571 kb on - strandat 916.678 kb on - strandat 916.687 kb on + strandat 916.724 kb on - strand, within SMa5010at 916.879 kb on - strand, within SMa5010at 917.001 kb on + strandat 917.002 kb on - strandat 917.002 kb on - strandat 917.005 kb on + strandat 917.027 kb on + strandat 917.028 kb on - strandat 917.065 kb on - strandat 917.133 kb on + strandat 917.171 kb on + strandat 917.233 kb on + strandat 917.324 kb on - strandat 917.325 kb on + strandat 917.325 kb on + strandat 917.362 kb on + strandat 917.363 kb on - strandat 917.368 kb on + strandat 917.369 kb on - strandat 917.454 kb on - strandat 917.454 kb on - strandat 917.565 kb on + strand, within SMa1646at 917.566 kb on - strand, within SMa1646at 917.566 kb on - strand, within SMa1646at 917.660 kb on + strand, within SMa1646at 917.660 kb on + strand, within SMa1646at 917.660 kb on + strand, within SMa1646at 917.713 kb on + strand, within SMa1646at 917.713 kb on + strand, within SMa1646at 917.713 kb on + strand, within SMa1646at 917.714 kb on - strand, within SMa1646at 917.714 kb on - strand, within SMa1646at 917.722 kb on + strand, within SMa1646at 917.723 kb on - strand, within SMa1646at 917.839 kb on - strand, within SMa1646at 918.025 kb on + strand, within SMa1646at 918.025 kb on + strand, within SMa1646at 918.094 kb on + strand, within SMa1646at 918.095 kb on - strand, within SMa1646at 918.095 kb on - strand, within SMa1646at 918.095 kb on - strand, within SMa1646at 918.095 kb on - strand, within SMa1646at 918.112 kb on + strand, within SMa1646at 918.113 kb on - strand, within SMa1646at 918.169 kb on - strand, within SMa1646at 918.169 kb on - strandat 918.319 kb on + strandat 918.319 kb on + strandat 918.319 kb on + strandat 918.319 kb on + strandat 918.320 kb on - strandat 918.320 kb on - strandat 918.320 kb on - strandat 918.320 kb on - strandat 918.320 kb on - strandat 918.549 kb on - strand, within SMa1647at 918.549 kb on - strand, within SMa1647at 918.611 kb on + strand, within SMa1647at 918.687 kb on + strand, within SMa1647at 918.688 kb on - strand, within SMa1647at 918.688 kb on - strand, within SMa1647at 918.688 kb on - strand, within SMa1647at 918.884 kb on + strand, within SMa1647at 918.952 kb on + strand, within SMa1647at 918.974 kb on + strand, within SMa1647at 918.975 kb on - strand, within SMa1647at 918.975 kb on - strand, within SMa1647at 919.055 kb on + strand, within SMa1647at 919.136 kb on + strand, within SMa1647at 919.291 kb on - strandat 919.291 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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916,451 - -1.3
916,453 + -0.5
916,454 - -0.0
916,454 - -0.3
916,571 - -0.7
916,678 - +0.3
916,687 + +0.2
916,724 - SMa5010 0.17 -2.1
916,879 - SMa5010 0.63 -0.0
917,001 + +0.1
917,002 - +1.2
917,002 - -1.6
917,005 + -0.9
917,027 + +0.7
917,028 - +2.5
917,065 - +0.5
917,133 + -0.2
917,171 + +0.8
917,233 + -0.5
917,324 - +4.0
917,325 + -0.3
917,325 + +0.2
917,362 + +0.4
917,363 - +0.5
917,368 + -0.3
917,369 - +0.5
917,454 - -0.9
917,454 - -1.0
917,565 + SMa1646 0.19 +2.0
917,566 - SMa1646 0.19 +0.2
917,566 - SMa1646 0.19 +1.4
917,660 + SMa1646 0.29 -2.0
917,660 + SMa1646 0.29 -0.9
917,660 + SMa1646 0.29 -2.5
917,713 + SMa1646 0.34 -2.1
917,713 + SMa1646 0.34 -1.2
917,713 + SMa1646 0.34 +0.4
917,714 - SMa1646 0.34 +1.8
917,714 - SMa1646 0.34 -0.1
917,722 + SMa1646 0.35 -1.0
917,723 - SMa1646 0.35 -0.9
917,839 - SMa1646 0.46 -0.1
918,025 + SMa1646 0.64 +0.8
918,025 + SMa1646 0.64 -1.0
918,094 + SMa1646 0.71 +0.2
918,095 - SMa1646 0.71 -1.3
918,095 - SMa1646 0.71 +0.0
918,095 - SMa1646 0.71 +1.4
918,095 - SMa1646 0.71 -0.9
918,112 + SMa1646 0.73 +0.1
918,113 - SMa1646 0.73 -0.7
918,169 - SMa1646 0.78 -0.2
918,169 - -0.8
918,319 + -0.5
918,319 + +0.1
918,319 + -0.7
918,319 + -0.7
918,320 - +0.8
918,320 - -0.2
918,320 - -0.0
918,320 - -1.8
918,320 - -0.1
918,549 - SMa1647 0.16 +1.4
918,549 - SMa1647 0.16 +0.8
918,611 + SMa1647 0.23 -0.8
918,687 + SMa1647 0.30 +0.7
918,688 - SMa1647 0.30 +0.7
918,688 - SMa1647 0.30 +0.1
918,688 - SMa1647 0.30 -1.8
918,884 + SMa1647 0.50 -0.5
918,952 + SMa1647 0.57 +0.1
918,974 + SMa1647 0.59 -0.9
918,975 - SMa1647 0.59 +0.3
918,975 - SMa1647 0.59 +0.1
919,055 + SMa1647 0.67 -0.0
919,136 + SMa1647 0.75 -0.0
919,291 - -1.1
919,291 - +0.3

Or see this region's nucleotide sequence