Strain Fitness in Sinorhizobium meliloti 1021 around SMa1483

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1480 and SMa1483 are separated by 235 nucleotidesSMa1483 and SMa5009 are separated by 60 nucleotidesSMa5009 and SMa1485 overlap by 4 nucleotides SMa1480: SMa1480 - LysR family transcriptional regulator, at 814,015 to 814,902 SMa1480 SMa1483: SMa1483 - dehydrogenase, at 815,138 to 817,558 SMa1483 SMa5009: SMa5009 - hypothetical protein, at 817,619 to 817,969 SMa5009 SMa1485: SMa1485 - Permease, MFS, at 817,966 to 819,255 SMa1485 Position (kb) 815 816 817 818Strain fitness (log2 ratio) -2 -1 0 1 2at 814.150 kb on + strand, within SMa1480at 814.151 kb on - strand, within SMa1480at 814.261 kb on - strand, within SMa1480at 814.386 kb on - strand, within SMa1480at 814.511 kb on + strand, within SMa1480at 814.512 kb on - strand, within SMa1480at 814.512 kb on - strand, within SMa1480at 814.637 kb on + strand, within SMa1480at 814.637 kb on + strand, within SMa1480at 814.637 kb on + strand, within SMa1480at 814.638 kb on - strand, within SMa1480at 814.638 kb on - strand, within SMa1480at 814.750 kb on + strand, within SMa1480at 814.750 kb on + strand, within SMa1480at 814.750 kb on + strand, within SMa1480at 814.751 kb on - strand, within SMa1480at 814.751 kb on - strand, within SMa1480at 814.751 kb on - strand, within SMa1480at 814.751 kb on - strand, within SMa1480at 814.810 kb on + strand, within SMa1480at 814.811 kb on - strand, within SMa1480at 814.811 kb on - strand, within SMa1480at 814.814 kb on - strandat 815.136 kb on - strandat 815.199 kb on - strandat 815.335 kb on + strandat 815.335 kb on + strandat 815.336 kb on - strandat 815.336 kb on - strandat 815.336 kb on - strandat 815.336 kb on - strandat 815.336 kb on - strandat 815.348 kb on + strandat 815.349 kb on - strandat 815.408 kb on + strand, within SMa1483at 815.558 kb on + strand, within SMa1483at 815.559 kb on - strand, within SMa1483at 815.559 kb on - strand, within SMa1483at 815.606 kb on + strand, within SMa1483at 815.606 kb on + strand, within SMa1483at 815.640 kb on + strand, within SMa1483at 815.641 kb on - strand, within SMa1483at 815.718 kb on + strand, within SMa1483at 815.718 kb on + strand, within SMa1483at 815.718 kb on + strand, within SMa1483at 815.718 kb on + strand, within SMa1483at 815.718 kb on + strand, within SMa1483at 815.719 kb on - strand, within SMa1483at 815.719 kb on - strand, within SMa1483at 815.719 kb on - strand, within SMa1483at 815.817 kb on - strand, within SMa1483at 815.895 kb on - strand, within SMa1483at 815.895 kb on - strandat 815.898 kb on - strand, within SMa1483at 815.937 kb on - strand, within SMa1483at 816.118 kb on + strand, within SMa1483at 816.159 kb on - strand, within SMa1483at 816.159 kb on - strand, within SMa1483at 816.159 kb on - strand, within SMa1483at 816.332 kb on + strand, within SMa1483at 816.333 kb on - strand, within SMa1483at 816.605 kb on + strand, within SMa1483at 816.668 kb on - strand, within SMa1483at 816.794 kb on + strand, within SMa1483at 816.794 kb on + strand, within SMa1483at 817.187 kb on + strand, within SMa1483at 817.188 kb on - strand, within SMa1483at 817.404 kb on - strandat 817.406 kb on - strandat 817.597 kb on - strandat 817.731 kb on + strandat 817.731 kb on + strand, within SMa5009at 817.732 kb on - strand, within SMa5009at 817.761 kb on + strand, within SMa5009at 817.762 kb on - strand, within SMa5009at 817.762 kb on - strand, within SMa5009at 817.762 kb on - strand, within SMa5009at 817.764 kb on + strand, within SMa5009at 817.764 kb on + strand, within SMa5009at 817.764 kb on + strand, within SMa5009at 817.764 kb on + strand, within SMa5009at 817.764 kb on + strand, within SMa5009at 817.764 kb on + strand, within SMa5009at 817.764 kb on + strand, within SMa5009at 817.765 kb on - strand, within SMa5009at 817.834 kb on - strand, within SMa5009at 817.858 kb on - strand, within SMa5009at 817.858 kb on - strand, within SMa5009at 817.973 kb on - strandat 818.420 kb on + strand, within SMa1485at 818.420 kb on + strand, within SMa1485

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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814,150 + SMa1480 0.15 +0.3
814,151 - SMa1480 0.15 +0.3
814,261 - SMa1480 0.28 -0.6
814,386 - SMa1480 0.42 -0.2
814,511 + SMa1480 0.56 -0.4
814,512 - SMa1480 0.56 -1.3
814,512 - SMa1480 0.56 -1.5
814,637 + SMa1480 0.70 +1.5
814,637 + SMa1480 0.70 +0.9
814,637 + SMa1480 0.70 -0.7
814,638 - SMa1480 0.70 -0.3
814,638 - SMa1480 0.70 +0.0
814,750 + SMa1480 0.83 +0.3
814,750 + SMa1480 0.83 +1.7
814,750 + SMa1480 0.83 -0.4
814,751 - SMa1480 0.83 +0.2
814,751 - SMa1480 0.83 -1.7
814,751 - SMa1480 0.83 -0.8
814,751 - SMa1480 0.83 +0.2
814,810 + SMa1480 0.90 -2.6
814,811 - SMa1480 0.90 -2.5
814,811 - SMa1480 0.90 +1.1
814,814 - +2.1
815,136 - -0.1
815,199 - -1.2
815,335 + +0.6
815,335 + +2.7
815,336 - -0.2
815,336 - -0.1
815,336 - -1.5
815,336 - -0.1
815,336 - -1.0
815,348 + +0.2
815,349 - +0.2
815,408 + SMa1483 0.11 -0.8
815,558 + SMa1483 0.17 +0.2
815,559 - SMa1483 0.17 -0.2
815,559 - SMa1483 0.17 -0.5
815,606 + SMa1483 0.19 -1.1
815,606 + SMa1483 0.19 +0.2
815,640 + SMa1483 0.21 +0.9
815,641 - SMa1483 0.21 -2.4
815,718 + SMa1483 0.24 +1.8
815,718 + SMa1483 0.24 -0.7
815,718 + SMa1483 0.24 -0.2
815,718 + SMa1483 0.24 -1.2
815,718 + SMa1483 0.24 -0.7
815,719 - SMa1483 0.24 +0.9
815,719 - SMa1483 0.24 +0.1
815,719 - SMa1483 0.24 -2.1
815,817 - SMa1483 0.28 -0.2
815,895 - SMa1483 0.31 -2.3
815,895 - +0.2
815,898 - SMa1483 0.31 -0.9
815,937 - SMa1483 0.33 -1.5
816,118 + SMa1483 0.40 -1.5
816,159 - SMa1483 0.42 -1.3
816,159 - SMa1483 0.42 +0.3
816,159 - SMa1483 0.42 -1.3
816,332 + SMa1483 0.49 +0.5
816,333 - SMa1483 0.49 -2.2
816,605 + SMa1483 0.61 +0.7
816,668 - SMa1483 0.63 -0.8
816,794 + SMa1483 0.68 +1.5
816,794 + SMa1483 0.68 -1.1
817,187 + SMa1483 0.85 +0.3
817,188 - SMa1483 0.85 +1.6
817,404 - +0.3
817,406 - +0.9
817,597 - -0.4
817,731 + +0.8
817,731 + SMa5009 0.32 +0.4
817,732 - SMa5009 0.32 -1.0
817,761 + SMa5009 0.40 +0.8
817,762 - SMa5009 0.41 +0.6
817,762 - SMa5009 0.41 -0.1
817,762 - SMa5009 0.41 -2.6
817,764 + SMa5009 0.41 +0.0
817,764 + SMa5009 0.41 +1.0
817,764 + SMa5009 0.41 +0.7
817,764 + SMa5009 0.41 +0.4
817,764 + SMa5009 0.41 -0.6
817,764 + SMa5009 0.41 -0.3
817,764 + SMa5009 0.41 +1.2
817,765 - SMa5009 0.42 -0.4
817,834 - SMa5009 0.61 -0.1
817,858 - SMa5009 0.68 +0.2
817,858 - SMa5009 0.68 +0.3
817,973 - +0.2
818,420 + SMa1485 0.35 -0.2
818,420 + SMa1485 0.35 +1.4

Or see this region's nucleotide sequence