Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1345 and SMa1347 are separated by 108 nucleotides SMa1347 and SMa1349 are separated by 25 nucleotides SMa1349 and SMa1351 are separated by 2 nucleotides
SMa1345: SMa1345 - ABC transporter ATP-binding protein, at 735,959 to 737,035
SMa1345
SMa1347: SMa1347 - dehydrogenase, at 737,144 to 738,118
SMa1347
SMa1349: SMa1349 - GntR family transcriptional regulator, at 738,144 to 738,836
SMa1349
SMa1351: SMa1351 - enolase, at 738,839 to 740,047
SMa1351
Position (kb) 737
738
739 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 736.208 kb on + strand, within SMa1345 at 736.227 kb on - strand, within SMa1345 at 736.228 kb on + strand, within SMa1345 at 736.628 kb on + strand, within SMa1345 at 736.628 kb on + strand, within SMa1345 at 736.628 kb on + strand, within SMa1345 at 736.628 kb on + strand, within SMa1345 at 736.628 kb on + strand, within SMa1345 at 736.629 kb on - strand, within SMa1345 at 736.629 kb on - strand, within SMa1345 at 736.629 kb on - strand, within SMa1345 at 736.848 kb on + strand, within SMa1345 at 736.849 kb on - strand, within SMa1345 at 736.894 kb on + strand, within SMa1345 at 736.900 kb on + strand, within SMa1345 at 736.900 kb on + strand, within SMa1345 at 736.901 kb on - strand, within SMa1345 at 737.145 kb on + strand at 737.322 kb on + strand, within SMa1347 at 737.322 kb on + strand, within SMa1347 at 737.322 kb on + strand, within SMa1347 at 737.323 kb on - strand, within SMa1347 at 737.323 kb on - strand, within SMa1347 at 737.350 kb on + strand, within SMa1347 at 737.351 kb on - strand at 737.351 kb on - strand, within SMa1347 at 737.637 kb on + strand, within SMa1347 at 737.740 kb on + strand, within SMa1347 at 737.740 kb on + strand, within SMa1347 at 737.773 kb on + strand, within SMa1347 at 737.925 kb on - strand, within SMa1347 at 737.943 kb on - strand, within SMa1347 at 738.071 kb on - strand at 738.071 kb on - strand at 738.146 kb on - strand at 738.263 kb on - strand, within SMa1349 at 738.266 kb on + strand, within SMa1349 at 738.266 kb on + strand, within SMa1349 at 738.272 kb on + strand, within SMa1349 at 738.273 kb on - strand, within SMa1349 at 738.273 kb on - strand, within SMa1349 at 738.273 kb on - strand, within SMa1349 at 738.316 kb on + strand, within SMa1349 at 738.316 kb on + strand, within SMa1349 at 738.321 kb on - strand, within SMa1349 at 738.346 kb on + strand, within SMa1349 at 738.347 kb on - strand, within SMa1349 at 738.347 kb on - strand, within SMa1349 at 738.349 kb on + strand, within SMa1349 at 738.451 kb on + strand, within SMa1349 at 738.491 kb on - strand, within SMa1349 at 738.491 kb on - strand, within SMa1349 at 738.491 kb on - strand, within SMa1349 at 738.569 kb on - strand, within SMa1349 at 738.650 kb on - strand, within SMa1349 at 738.650 kb on - strand, within SMa1349 at 738.654 kb on - strand, within SMa1349 at 738.795 kb on + strand at 738.795 kb on + strand at 738.796 kb on - strand at 738.837 kb on - strand at 738.840 kb on + strand at 738.879 kb on - strand at 738.914 kb on + strand at 738.915 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 736,208 + SMa1345 0.23 +0.6 736,227 - SMa1345 0.25 +0.6 736,228 + SMa1345 0.25 +0.0 736,628 + SMa1345 0.62 +1.3 736,628 + SMa1345 0.62 +0.8 736,628 + SMa1345 0.62 -0.9 736,628 + SMa1345 0.62 +1.2 736,628 + SMa1345 0.62 -0.4 736,629 - SMa1345 0.62 -0.2 736,629 - SMa1345 0.62 -3.2 736,629 - SMa1345 0.62 +0.2 736,848 + SMa1345 0.83 -0.4 736,849 - SMa1345 0.83 -0.1 736,894 + SMa1345 0.87 -0.9 736,900 + SMa1345 0.87 +0.7 736,900 + SMa1345 0.87 +0.1 736,901 - SMa1345 0.87 +0.5 737,145 + -2.4 737,322 + SMa1347 0.18 -0.6 737,322 + SMa1347 0.18 -0.0 737,322 + SMa1347 0.18 +1.7 737,323 - SMa1347 0.18 -1.7 737,323 - SMa1347 0.18 -0.4 737,350 + SMa1347 0.21 +0.5 737,351 - +0.2 737,351 - SMa1347 0.21 -1.3 737,637 + SMa1347 0.51 -0.8 737,740 + SMa1347 0.61 -0.9 737,740 + SMa1347 0.61 -1.2 737,773 + SMa1347 0.65 +0.1 737,925 - SMa1347 0.80 +0.2 737,943 - SMa1347 0.82 -1.0 738,071 - -0.2 738,071 - -1.2 738,146 - +0.6 738,263 - SMa1349 0.17 +1.4 738,266 + SMa1349 0.18 -0.6 738,266 + SMa1349 0.18 -0.0 738,272 + SMa1349 0.18 +0.4 738,273 - SMa1349 0.19 +0.8 738,273 - SMa1349 0.19 -0.1 738,273 - SMa1349 0.19 -0.3 738,316 + SMa1349 0.25 -1.9 738,316 + SMa1349 0.25 -0.6 738,321 - SMa1349 0.26 +1.0 738,346 + SMa1349 0.29 -2.2 738,347 - SMa1349 0.29 +0.9 738,347 - SMa1349 0.29 -2.5 738,349 + SMa1349 0.30 +0.6 738,451 + SMa1349 0.44 +0.1 738,491 - SMa1349 0.50 +0.7 738,491 - SMa1349 0.50 +0.5 738,491 - SMa1349 0.50 +0.3 738,569 - SMa1349 0.61 +3.3 738,650 - SMa1349 0.73 -1.8 738,650 - SMa1349 0.73 +0.8 738,654 - SMa1349 0.74 -1.0 738,795 + +3.8 738,795 + -0.7 738,796 - -2.1 738,837 - -0.3 738,840 + +0.5 738,879 - -0.8 738,914 + -1.3 738,915 - +0.8
Or see this region's nucleotide sequence