Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0604 and SMa0606 overlap by 4 nucleotides SMa0606 and SMa0607 are separated by 52 nucleotides
SMa0604: SMa0604 - hypothetical protein, at 322,421 to 323,233
SMa0604
SMa0606: SMa0606 - hypothetical protein, at 323,230 to 323,565
SMa0606
SMa0607: SMa0607 - hypothetical protein, at 323,618 to 325,168
SMa0607
Position (kb) 323
324 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 322.373 kb on - strand at 322.400 kb on + strand at 322.400 kb on + strand at 322.401 kb on - strand at 322.401 kb on - strand at 322.401 kb on - strand at 322.403 kb on + strand at 322.403 kb on + strand at 322.403 kb on + strand at 322.404 kb on - strand at 322.404 kb on - strand at 322.617 kb on - strand, within SMa0604 at 322.621 kb on + strand, within SMa0604 at 322.622 kb on - strand, within SMa0604 at 322.664 kb on + strand, within SMa0604 at 322.732 kb on + strand, within SMa0604 at 322.733 kb on - strand, within SMa0604 at 322.733 kb on - strand, within SMa0604 at 322.776 kb on - strand, within SMa0604 at 322.789 kb on + strand, within SMa0604 at 322.789 kb on + strand, within SMa0604 at 322.789 kb on + strand, within SMa0604 at 322.790 kb on - strand, within SMa0604 at 322.904 kb on + strand, within SMa0604 at 322.905 kb on - strand, within SMa0604 at 323.094 kb on - strand, within SMa0604 at 323.131 kb on + strand, within SMa0604 at 323.153 kb on - strand at 323.258 kb on - strand at 323.444 kb on - strand, within SMa0606 at 323.498 kb on + strand, within SMa0606 at 323.518 kb on + strand, within SMa0606 at 323.519 kb on - strand, within SMa0606 at 323.519 kb on - strand, within SMa0606 at 323.519 kb on - strand, within SMa0606 at 323.519 kb on - strand, within SMa0606 at 323.519 kb on - strand, within SMa0606 at 323.543 kb on - strand at 323.554 kb on + strand at 323.554 kb on + strand at 323.602 kb on - strand at 323.636 kb on + strand at 323.636 kb on + strand at 323.636 kb on + strand at 323.688 kb on - strand at 323.711 kb on + strand at 324.005 kb on + strand, within SMa0607 at 324.006 kb on - strand, within SMa0607 at 324.155 kb on + strand, within SMa0607 at 324.156 kb on - strand, within SMa0607 at 324.200 kb on - strand, within SMa0607 at 324.219 kb on - strand, within SMa0607 at 324.219 kb on - strand, within SMa0607 at 324.221 kb on + strand, within SMa0607 at 324.221 kb on + strand, within SMa0607 at 324.222 kb on - strand, within SMa0607 at 324.222 kb on - strand, within SMa0607 at 324.329 kb on + strand, within SMa0607 at 324.426 kb on - strand, within SMa0607 at 324.426 kb on - strand, within SMa0607 at 324.426 kb on - strand, within SMa0607
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 322,373 - -0.1 322,400 + -0.9 322,400 + +1.5 322,401 - +0.9 322,401 - -0.0 322,401 - -2.1 322,403 + -1.5 322,403 + +0.2 322,403 + -0.7 322,404 - +1.5 322,404 - -0.3 322,617 - SMa0604 0.24 +0.5 322,621 + SMa0604 0.25 +0.4 322,622 - SMa0604 0.25 -0.1 322,664 + SMa0604 0.30 +0.3 322,732 + SMa0604 0.38 -0.8 322,733 - SMa0604 0.38 -0.1 322,733 - SMa0604 0.38 +0.7 322,776 - SMa0604 0.44 -0.0 322,789 + SMa0604 0.45 -2.5 322,789 + SMa0604 0.45 -0.4 322,789 + SMa0604 0.45 +0.7 322,790 - SMa0604 0.45 +0.4 322,904 + SMa0604 0.59 -0.3 322,905 - SMa0604 0.60 -2.5 323,094 - SMa0604 0.83 +2.4 323,131 + SMa0604 0.87 +0.3 323,153 - +1.9 323,258 - -1.8 323,444 - SMa0606 0.64 -1.1 323,498 + SMa0606 0.80 -0.7 323,518 + SMa0606 0.86 -1.2 323,519 - SMa0606 0.86 -0.0 323,519 - SMa0606 0.86 +0.0 323,519 - SMa0606 0.86 -1.6 323,519 - SMa0606 0.86 -0.5 323,519 - SMa0606 0.86 -0.4 323,543 - +0.6 323,554 + -0.4 323,554 + +0.2 323,602 - +0.5 323,636 + +0.4 323,636 + +0.4 323,636 + +0.2 323,688 - +0.1 323,711 + +0.9 324,005 + SMa0607 0.25 -0.5 324,006 - SMa0607 0.25 -2.8 324,155 + SMa0607 0.35 +1.6 324,156 - SMa0607 0.35 -1.7 324,200 - SMa0607 0.38 -3.3 324,219 - SMa0607 0.39 +0.2 324,219 - SMa0607 0.39 -2.9 324,221 + SMa0607 0.39 +3.0 324,221 + SMa0607 0.39 +0.1 324,222 - SMa0607 0.39 -0.5 324,222 - SMa0607 0.39 -0.7 324,329 + SMa0607 0.46 +0.3 324,426 - SMa0607 0.52 -1.0 324,426 - SMa0607 0.52 -2.8 324,426 - SMa0607 0.52 -0.2
Or see this region's nucleotide sequence