Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21441 and SM_b21442 are separated by 12 nucleotides SM_b21442 and SM_b21443 are separated by 51 nucleotides SM_b21443 and SM_b21444 are separated by 17 nucleotides
SM_b21441: SM_b21441 - inosine-5'-monophosphate dehydrogenase, at 1,371,045 to 1,371,485
_b21441
SM_b21442: SM_b21442 - hypothetical protein, at 1,371,498 to 1,371,947
_b21442
SM_b21443: SM_b21443 - hypothetical protein, at 1,371,999 to 1,372,313
_b21443
SM_b21444: SM_b21444 - osmotic sensory protein, at 1,372,331 to 1,373,074
_b21444
Position (kb)
1371
1372
1373 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1371.040 kb on - strand at 1371.040 kb on - strand at 1371.041 kb on + strand at 1371.305 kb on + strand, within SM_b21441 at 1371.306 kb on - strand, within SM_b21441 at 1371.306 kb on - strand, within SM_b21441 at 1371.477 kb on + strand at 1371.847 kb on - strand, within SM_b21442 at 1371.893 kb on + strand, within SM_b21442 at 1371.894 kb on - strand, within SM_b21442 at 1371.911 kb on + strand at 1371.982 kb on - strand at 1372.002 kb on + strand at 1372.002 kb on + strand at 1372.002 kb on + strand at 1372.002 kb on + strand at 1372.003 kb on - strand at 1372.003 kb on - strand at 1372.003 kb on - strand at 1372.003 kb on - strand at 1372.003 kb on - strand at 1372.003 kb on - strand at 1372.003 kb on - strand at 1372.003 kb on - strand at 1372.134 kb on + strand, within SM_b21443 at 1372.134 kb on + strand, within SM_b21443 at 1372.135 kb on - strand, within SM_b21443 at 1372.358 kb on + strand at 1372.358 kb on + strand at 1372.359 kb on - strand at 1372.424 kb on + strand, within SM_b21444 at 1372.430 kb on + strand, within SM_b21444 at 1372.430 kb on + strand, within SM_b21444 at 1372.431 kb on - strand, within SM_b21444 at 1372.533 kb on - strand, within SM_b21444 at 1372.578 kb on - strand, within SM_b21444 at 1372.613 kb on + strand, within SM_b21444 at 1372.613 kb on + strand, within SM_b21444 at 1372.613 kb on + strand at 1372.629 kb on - strand, within SM_b21444 at 1372.914 kb on + strand, within SM_b21444 at 1373.016 kb on + strand at 1373.016 kb on + strand at 1373.017 kb on - strand at 1373.017 kb on - strand at 1373.038 kb on + strand at 1373.038 kb on + strand at 1373.038 kb on + strand at 1373.039 kb on - strand at 1373.039 kb on - strand at 1373.068 kb on + strand at 1373.110 kb on + strand at 1373.110 kb on + strand at 1373.186 kb on + strand at 1373.186 kb on + strand at 1373.187 kb on - strand at 1373.190 kb on + strand at 1373.190 kb on + strand at 1373.190 kb on + strand at 1373.191 kb on - strand at 1373.191 kb on - strand at 1373.253 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 1,371,040 - -0.2 1,371,040 - +1.8 1,371,041 + +0.8 1,371,305 + SM_b21441 0.59 +0.6 1,371,306 - SM_b21441 0.59 -1.6 1,371,306 - SM_b21441 0.59 +0.5 1,371,477 + +0.3 1,371,847 - SM_b21442 0.78 +0.2 1,371,893 + SM_b21442 0.88 -0.1 1,371,894 - SM_b21442 0.88 -0.5 1,371,911 + -2.3 1,371,982 - -0.1 1,372,002 + +1.4 1,372,002 + +0.4 1,372,002 + -0.0 1,372,002 + -1.8 1,372,003 - +2.4 1,372,003 - +0.4 1,372,003 - +2.3 1,372,003 - +0.3 1,372,003 - -0.7 1,372,003 - -2.3 1,372,003 - +0.3 1,372,003 - -0.6 1,372,134 + SM_b21443 0.43 -0.8 1,372,134 + SM_b21443 0.43 -2.7 1,372,135 - SM_b21443 0.43 -1.5 1,372,358 + +0.6 1,372,358 + +0.3 1,372,359 - -0.4 1,372,424 + SM_b21444 0.12 -0.9 1,372,430 + SM_b21444 0.13 +0.8 1,372,430 + SM_b21444 0.13 +0.9 1,372,431 - SM_b21444 0.13 -0.0 1,372,533 - SM_b21444 0.27 +0.2 1,372,578 - SM_b21444 0.33 -0.2 1,372,613 + SM_b21444 0.38 -1.2 1,372,613 + SM_b21444 0.38 +0.5 1,372,613 + +2.3 1,372,629 - SM_b21444 0.40 +0.1 1,372,914 + SM_b21444 0.78 -0.7 1,373,016 + -0.6 1,373,016 + +0.3 1,373,017 - -0.1 1,373,017 - +1.6 1,373,038 + +0.6 1,373,038 + +0.7 1,373,038 + +0.8 1,373,039 - -0.6 1,373,039 - +0.2 1,373,068 + +0.5 1,373,110 + +0.4 1,373,110 + +0.6 1,373,186 + -0.5 1,373,186 + +0.1 1,373,187 - -0.2 1,373,190 + -0.1 1,373,190 + +1.4 1,373,190 + -2.2 1,373,191 - -1.6 1,373,191 - -0.1 1,373,253 - -1.8
Or see this region's nucleotide sequence