Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21420 and SM_b21421 are separated by 73 nucleotides SM_b21421 and SM_b21422 overlap by 4 nucleotides
SM_b21420: SM_b21420 - L-arabinose isomerase, at 1,350,177 to 1,351,604
_b21420
SM_b21421: SM_b21421 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,351,678 to 1,352,739
_b21421
SM_b21422: SM_b21422 - sugar uptake ABC transporter ATP-binding protein, at 1,352,736 to 1,354,232
_b21422
Position (kb)
1351
1352
1353 Strain fitness (log2 ratio)
-2
-1
0
1 at 1350.723 kb on - strand, within SM_b21420 at 1350.750 kb on + strand, within SM_b21420 at 1350.751 kb on - strand, within SM_b21420 at 1350.751 kb on - strand, within SM_b21420 at 1350.751 kb on - strand, within SM_b21420 at 1350.751 kb on - strand, within SM_b21420 at 1350.751 kb on - strand, within SM_b21420 at 1350.751 kb on - strand, within SM_b21420 at 1350.752 kb on + strand, within SM_b21420 at 1350.771 kb on + strand, within SM_b21420 at 1350.771 kb on + strand, within SM_b21420 at 1350.771 kb on + strand, within SM_b21420 at 1350.772 kb on - strand, within SM_b21420 at 1351.011 kb on + strand, within SM_b21420 at 1351.012 kb on - strand, within SM_b21420 at 1351.015 kb on - strand, within SM_b21420 at 1351.015 kb on - strand, within SM_b21420 at 1351.017 kb on + strand, within SM_b21420 at 1351.041 kb on + strand, within SM_b21420 at 1351.041 kb on + strand, within SM_b21420 at 1351.042 kb on - strand, within SM_b21420 at 1351.188 kb on + strand, within SM_b21420 at 1351.189 kb on - strand, within SM_b21420 at 1351.189 kb on - strand, within SM_b21420 at 1351.273 kb on + strand, within SM_b21420 at 1351.273 kb on + strand, within SM_b21420 at 1351.274 kb on - strand, within SM_b21420 at 1351.274 kb on - strand, within SM_b21420 at 1351.274 kb on - strand, within SM_b21420 at 1351.290 kb on + strand, within SM_b21420 at 1351.393 kb on + strand, within SM_b21420 at 1351.393 kb on + strand, within SM_b21420 at 1351.393 kb on + strand, within SM_b21420 at 1351.393 kb on + strand, within SM_b21420 at 1351.394 kb on - strand, within SM_b21420 at 1351.394 kb on - strand, within SM_b21420 at 1351.394 kb on - strand, within SM_b21420 at 1351.394 kb on - strand, within SM_b21420 at 1351.394 kb on - strand, within SM_b21420 at 1351.583 kb on - strand at 1351.583 kb on - strand at 1351.650 kb on + strand at 1351.651 kb on - strand at 1351.651 kb on - strand at 1351.651 kb on - strand at 1351.651 kb on - strand at 1351.651 kb on - strand at 1351.651 kb on - strand at 1351.651 kb on - strand at 1351.651 kb on - strand at 1351.651 kb on - strand at 1351.653 kb on - strand at 1352.203 kb on - strand, within SM_b21421 at 1352.233 kb on + strand, within SM_b21421 at 1352.234 kb on - strand, within SM_b21421 at 1352.591 kb on - strand, within SM_b21421 at 1352.605 kb on + strand, within SM_b21421 at 1352.758 kb on + strand at 1353.205 kb on + strand, within SM_b21422 at 1353.205 kb on + strand, within SM_b21422 at 1353.206 kb on - strand, within SM_b21422 at 1353.321 kb on + strand, within SM_b21422 at 1353.321 kb on + strand, within SM_b21422 at 1353.322 kb on - strand, within SM_b21422 at 1353.402 kb on - strand, within SM_b21422 at 1353.402 kb on - strand, within SM_b21422 at 1353.437 kb on - strand, within SM_b21422 at 1353.437 kb on - strand, within SM_b21422 at 1353.437 kb on - strand, within SM_b21422 at 1353.593 kb on + strand, within SM_b21422 at 1353.666 kb on + strand, within SM_b21422 at 1353.666 kb on + strand, within SM_b21422 at 1353.666 kb on + strand, within SM_b21422 at 1353.666 kb on + strand, within SM_b21422 at 1353.667 kb on - strand, within SM_b21422 at 1353.667 kb on - strand, within SM_b21422 at 1353.667 kb on - strand, within SM_b21422 at 1353.724 kb on + strand, within SM_b21422 at 1353.724 kb on + strand, within SM_b21422 at 1353.724 kb on + strand, within SM_b21422 at 1353.733 kb on + strand, within SM_b21422
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 1,350,723 - SM_b21420 0.38 +1.0 1,350,750 + SM_b21420 0.40 -0.3 1,350,751 - SM_b21420 0.40 -0.1 1,350,751 - SM_b21420 0.40 -0.3 1,350,751 - SM_b21420 0.40 +0.1 1,350,751 - SM_b21420 0.40 -0.8 1,350,751 - SM_b21420 0.40 +0.9 1,350,751 - SM_b21420 0.40 +0.2 1,350,752 + SM_b21420 0.40 -0.6 1,350,771 + SM_b21420 0.42 +0.3 1,350,771 + SM_b21420 0.42 -0.2 1,350,771 + SM_b21420 0.42 -1.3 1,350,772 - SM_b21420 0.42 +0.2 1,351,011 + SM_b21420 0.58 +0.3 1,351,012 - SM_b21420 0.58 -2.0 1,351,015 - SM_b21420 0.59 +0.7 1,351,015 - SM_b21420 0.59 -0.2 1,351,017 + SM_b21420 0.59 -0.6 1,351,041 + SM_b21420 0.61 -1.6 1,351,041 + SM_b21420 0.61 -2.7 1,351,042 - SM_b21420 0.61 +0.5 1,351,188 + SM_b21420 0.71 -0.5 1,351,189 - SM_b21420 0.71 -0.5 1,351,189 - SM_b21420 0.71 +0.3 1,351,273 + SM_b21420 0.77 -0.7 1,351,273 + SM_b21420 0.77 +0.8 1,351,274 - SM_b21420 0.77 -2.0 1,351,274 - SM_b21420 0.77 +0.1 1,351,274 - SM_b21420 0.77 -2.3 1,351,290 + SM_b21420 0.78 -0.6 1,351,393 + SM_b21420 0.85 +0.5 1,351,393 + SM_b21420 0.85 +0.6 1,351,393 + SM_b21420 0.85 -1.4 1,351,393 + SM_b21420 0.85 -1.8 1,351,394 - SM_b21420 0.85 -1.6 1,351,394 - SM_b21420 0.85 +1.1 1,351,394 - SM_b21420 0.85 +0.7 1,351,394 - SM_b21420 0.85 -0.6 1,351,394 - SM_b21420 0.85 +0.1 1,351,583 - -1.1 1,351,583 - -1.5 1,351,650 + -0.5 1,351,651 - -2.3 1,351,651 - +0.5 1,351,651 - +0.3 1,351,651 - -0.5 1,351,651 - -0.5 1,351,651 - +1.5 1,351,651 - -0.7 1,351,651 - -1.9 1,351,651 - +1.3 1,351,653 - +1.2 1,352,203 - SM_b21421 0.49 -0.8 1,352,233 + SM_b21421 0.52 +0.1 1,352,234 - SM_b21421 0.52 -0.2 1,352,591 - SM_b21421 0.86 -2.6 1,352,605 + SM_b21421 0.87 -0.6 1,352,758 + -0.6 1,353,205 + SM_b21422 0.31 +0.4 1,353,205 + SM_b21422 0.31 +1.4 1,353,206 - SM_b21422 0.31 -0.1 1,353,321 + SM_b21422 0.39 -0.2 1,353,321 + SM_b21422 0.39 -0.1 1,353,322 - SM_b21422 0.39 +0.6 1,353,402 - SM_b21422 0.44 -0.4 1,353,402 - SM_b21422 0.44 -2.2 1,353,437 - SM_b21422 0.47 -0.2 1,353,437 - SM_b21422 0.47 -0.6 1,353,437 - SM_b21422 0.47 -0.2 1,353,593 + SM_b21422 0.57 -1.2 1,353,666 + SM_b21422 0.62 +1.7 1,353,666 + SM_b21422 0.62 -1.8 1,353,666 + SM_b21422 0.62 +0.9 1,353,666 + SM_b21422 0.62 +0.5 1,353,667 - SM_b21422 0.62 -0.1 1,353,667 - SM_b21422 0.62 +0.0 1,353,667 - SM_b21422 0.62 -1.4 1,353,724 + SM_b21422 0.66 -0.8 1,353,724 + SM_b21422 0.66 -0.0 1,353,724 + SM_b21422 0.66 +0.4 1,353,733 + SM_b21422 0.67 -1.3
Or see this region's nucleotide sequence