Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21265 and SM_b21266 overlap by 4 nucleotides SM_b21266 and SM_b21267 are separated by 58 nucleotides SM_b21267 and SM_b21268 are separated by 151 nucleotides
SM_b21265: SM_b21265 - glycosyltransferase, at 838,365 to 839,612
_b21265
SM_b21266: SM_b21266 - hypothetical protein, at 839,609 to 840,796
_b21266
SM_b21267: SM_b21267 - hypothetical protein, at 840,855 to 841,532
_b21267
SM_b21268: SM_b21268 - hypothetical protein, at 841,684 to 842,397
_b21268
Position (kb) 839
840
841 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 838.785 kb on + strand, within SM_b21265 at 838.786 kb on - strand, within SM_b21265 at 838.795 kb on + strand, within SM_b21265 at 838.795 kb on + strand, within SM_b21265 at 838.795 kb on + strand, within SM_b21265 at 838.795 kb on + strand, within SM_b21265 at 838.796 kb on - strand, within SM_b21265 at 838.796 kb on - strand, within SM_b21265 at 838.850 kb on + strand, within SM_b21265 at 838.851 kb on - strand, within SM_b21265 at 838.918 kb on - strand, within SM_b21265 at 838.968 kb on + strand, within SM_b21265 at 838.969 kb on - strand, within SM_b21265 at 839.091 kb on + strand, within SM_b21265 at 839.153 kb on + strand at 839.154 kb on - strand, within SM_b21265 at 839.372 kb on + strand, within SM_b21265 at 839.373 kb on - strand, within SM_b21265 at 839.373 kb on - strand, within SM_b21265 at 839.375 kb on - strand, within SM_b21265 at 839.634 kb on - strand at 840.105 kb on + strand, within SM_b21266 at 840.106 kb on - strand, within SM_b21266 at 840.106 kb on - strand, within SM_b21266 at 840.137 kb on - strand, within SM_b21266 at 840.187 kb on + strand, within SM_b21266 at 840.339 kb on + strand, within SM_b21266 at 840.476 kb on + strand, within SM_b21266 at 840.476 kb on + strand, within SM_b21266 at 840.477 kb on - strand, within SM_b21266 at 840.477 kb on - strand, within SM_b21266 at 840.775 kb on + strand at 840.775 kb on + strand at 840.891 kb on + strand at 840.891 kb on + strand at 840.891 kb on + strand at 840.891 kb on + strand at 840.891 kb on + strand at 840.891 kb on + strand at 840.892 kb on - strand at 840.892 kb on - strand at 840.892 kb on - strand at 840.892 kb on - strand at 841.338 kb on + strand, within SM_b21267 at 841.339 kb on - strand, within SM_b21267 at 841.459 kb on + strand, within SM_b21267 at 841.459 kb on + strand, within SM_b21267 at 841.460 kb on - strand at 841.526 kb on + strand at 841.526 kb on + strand at 841.527 kb on - strand at 841.527 kb on - strand at 841.527 kb on - strand at 841.527 kb on - strand at 841.538 kb on + strand at 841.538 kb on + strand at 841.545 kb on + strand at 841.545 kb on + strand at 841.545 kb on + strand at 841.546 kb on - strand at 841.663 kb on + strand at 841.704 kb on + strand at 841.704 kb on + strand at 841.705 kb on - strand at 841.705 kb on - strand at 841.744 kb on + strand at 841.744 kb on + strand at 841.782 kb on - strand, within SM_b21268
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 838,785 + SM_b21265 0.34 -1.3 838,786 - SM_b21265 0.34 +1.2 838,795 + SM_b21265 0.34 +0.5 838,795 + SM_b21265 0.34 +0.5 838,795 + SM_b21265 0.34 +1.0 838,795 + SM_b21265 0.34 +0.9 838,796 - SM_b21265 0.35 +0.1 838,796 - SM_b21265 0.35 +0.5 838,850 + SM_b21265 0.39 -0.2 838,851 - SM_b21265 0.39 +0.9 838,918 - SM_b21265 0.44 -0.6 838,968 + SM_b21265 0.48 +1.2 838,969 - SM_b21265 0.48 +1.2 839,091 + SM_b21265 0.58 +0.2 839,153 + +0.8 839,154 - SM_b21265 0.63 +1.0 839,372 + SM_b21265 0.81 +1.8 839,373 - SM_b21265 0.81 +0.8 839,373 - SM_b21265 0.81 +2.0 839,375 - SM_b21265 0.81 +0.8 839,634 - +0.7 840,105 + SM_b21266 0.42 +0.7 840,106 - SM_b21266 0.42 +1.6 840,106 - SM_b21266 0.42 +1.4 840,137 - SM_b21266 0.44 +1.6 840,187 + SM_b21266 0.49 +2.9 840,339 + SM_b21266 0.61 +1.1 840,476 + SM_b21266 0.73 +0.3 840,476 + SM_b21266 0.73 +0.1 840,477 - SM_b21266 0.73 +0.7 840,477 - SM_b21266 0.73 +4.0 840,775 + -0.5 840,775 + -0.8 840,891 + +1.2 840,891 + -0.3 840,891 + +0.9 840,891 + -0.5 840,891 + -0.4 840,891 + -0.8 840,892 - +0.3 840,892 - +0.1 840,892 - -1.8 840,892 - -0.6 841,338 + SM_b21267 0.71 -0.5 841,339 - SM_b21267 0.71 -0.4 841,459 + SM_b21267 0.89 +1.1 841,459 + SM_b21267 0.89 +0.5 841,460 - +1.8 841,526 + -0.7 841,526 + +0.7 841,527 - -1.9 841,527 - -0.1 841,527 - +1.0 841,527 - +1.2 841,538 + -0.9 841,538 + +0.5 841,545 + -0.2 841,545 + +0.5 841,545 + -1.0 841,546 - +0.7 841,663 + -0.3 841,704 + -0.2 841,704 + -0.2 841,705 - -0.2 841,705 - +2.4 841,744 + -1.0 841,744 + -0.1 841,782 - SM_b21268 0.14 +0.6
Or see this region's nucleotide sequence