Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21218 and SM_b21219 are separated by 2 nucleotides SM_b21219 and SM_b21220 overlap by 1 nucleotides
SM_b21218: SM_b21218 - glucosamine-6-phosphate deaminase, isomerizing (EC 3.5.99.6) <small>(from data)</small>, at 780,746 to 781,765
_b21218
SM_b21219: SM_b21219 - ABC transporter for D-Glucosamine, permease component 1 <small>(from data)</small>, at 781,768 to 782,613
_b21219
SM_b21220: SM_b21220 - ABC transporter for D-Glucosamine, permease component 2 <small>(from data)</small>, at 782,613 to 783,494
_b21220
Position (kb) 781
782
783 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 780.848 kb on - strand, within SM_b21218 at 780.848 kb on - strand, within SM_b21218 at 781.414 kb on + strand, within SM_b21218 at 781.415 kb on - strand, within SM_b21218 at 781.758 kb on - strand at 781.758 kb on - strand at 781.821 kb on + strand at 781.822 kb on - strand at 781.822 kb on - strand at 781.822 kb on - strand at 781.822 kb on - strand at 781.822 kb on - strand at 781.822 kb on - strand at 781.964 kb on + strand, within SM_b21219 at 782.166 kb on - strand, within SM_b21219 at 782.208 kb on - strand, within SM_b21219 at 782.221 kb on - strand, within SM_b21219 at 782.222 kb on + strand, within SM_b21219 at 782.222 kb on + strand, within SM_b21219 at 782.222 kb on + strand, within SM_b21219 at 782.222 kb on + strand, within SM_b21219 at 782.222 kb on + strand, within SM_b21219 at 782.222 kb on + strand, within SM_b21219 at 782.222 kb on + strand, within SM_b21219 at 782.223 kb on - strand, within SM_b21219 at 782.223 kb on - strand, within SM_b21219 at 782.223 kb on - strand, within SM_b21219 at 782.256 kb on + strand, within SM_b21219 at 782.256 kb on + strand, within SM_b21219 at 782.256 kb on + strand, within SM_b21219 at 782.257 kb on - strand, within SM_b21219 at 782.257 kb on - strand, within SM_b21219 at 782.257 kb on - strand, within SM_b21219 at 782.258 kb on + strand, within SM_b21219 at 782.258 kb on + strand, within SM_b21219 at 782.258 kb on + strand, within SM_b21219 at 782.258 kb on + strand, within SM_b21219 at 782.258 kb on + strand, within SM_b21219 at 782.258 kb on + strand, within SM_b21219 at 782.259 kb on - strand, within SM_b21219 at 782.259 kb on - strand, within SM_b21219 at 782.259 kb on - strand, within SM_b21219 at 782.259 kb on - strand, within SM_b21219 at 782.259 kb on - strand, within SM_b21219 at 782.259 kb on - strand, within SM_b21219 at 782.259 kb on - strand, within SM_b21219 at 782.831 kb on + strand, within SM_b21220 at 782.831 kb on + strand, within SM_b21220 at 782.832 kb on - strand, within SM_b21220 at 782.832 kb on - strand, within SM_b21220 at 782.869 kb on + strand, within SM_b21220 at 782.870 kb on - strand, within SM_b21220 at 783.058 kb on + strand, within SM_b21220 at 783.059 kb on - strand, within SM_b21220 at 783.118 kb on + strand, within SM_b21220 at 783.118 kb on + strand, within SM_b21220 at 783.118 kb on + strand, within SM_b21220 at 783.118 kb on + strand, within SM_b21220 at 783.119 kb on - strand, within SM_b21220 at 783.119 kb on - strand, within SM_b21220 at 783.119 kb on - strand, within SM_b21220 at 783.331 kb on + strand, within SM_b21220 at 783.332 kb on - strand, within SM_b21220 at 783.332 kb on - strand, within SM_b21220 at 783.529 kb on + strand at 783.530 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 780,848 - SM_b21218 0.10 +0.2 780,848 - SM_b21218 0.10 -0.6 781,414 + SM_b21218 0.65 +0.1 781,415 - SM_b21218 0.66 +1.8 781,758 - -2.1 781,758 - -0.6 781,821 + -2.6 781,822 - +0.3 781,822 - -0.2 781,822 - -1.7 781,822 - +0.5 781,822 - -0.4 781,822 - +0.4 781,964 + SM_b21219 0.23 -1.7 782,166 - SM_b21219 0.47 -0.1 782,208 - SM_b21219 0.52 -0.4 782,221 - SM_b21219 0.54 +0.1 782,222 + SM_b21219 0.54 -3.2 782,222 + SM_b21219 0.54 -0.2 782,222 + SM_b21219 0.54 -1.1 782,222 + SM_b21219 0.54 -1.3 782,222 + SM_b21219 0.54 -0.6 782,222 + SM_b21219 0.54 -1.6 782,222 + SM_b21219 0.54 +0.4 782,223 - SM_b21219 0.54 -0.8 782,223 - SM_b21219 0.54 +0.1 782,223 - SM_b21219 0.54 -1.2 782,256 + SM_b21219 0.58 +4.3 782,256 + SM_b21219 0.58 -2.9 782,256 + SM_b21219 0.58 -2.8 782,257 - SM_b21219 0.58 -0.1 782,257 - SM_b21219 0.58 -2.5 782,257 - SM_b21219 0.58 -0.5 782,258 + SM_b21219 0.58 -1.2 782,258 + SM_b21219 0.58 +0.0 782,258 + SM_b21219 0.58 +0.5 782,258 + SM_b21219 0.58 -1.9 782,258 + SM_b21219 0.58 -0.1 782,258 + SM_b21219 0.58 -1.6 782,259 - SM_b21219 0.58 -1.9 782,259 - SM_b21219 0.58 -0.8 782,259 - SM_b21219 0.58 -1.0 782,259 - SM_b21219 0.58 -1.0 782,259 - SM_b21219 0.58 +0.3 782,259 - SM_b21219 0.58 -1.4 782,259 - SM_b21219 0.58 +1.0 782,831 + SM_b21220 0.25 +2.7 782,831 + SM_b21220 0.25 -0.8 782,832 - SM_b21220 0.25 -3.1 782,832 - SM_b21220 0.25 +1.8 782,869 + SM_b21220 0.29 +1.4 782,870 - SM_b21220 0.29 -0.3 783,058 + SM_b21220 0.50 -0.5 783,059 - SM_b21220 0.51 -1.6 783,118 + SM_b21220 0.57 -1.2 783,118 + SM_b21220 0.57 -0.3 783,118 + SM_b21220 0.57 -0.1 783,118 + SM_b21220 0.57 +2.1 783,119 - SM_b21220 0.57 -0.5 783,119 - SM_b21220 0.57 -1.1 783,119 - SM_b21220 0.57 -0.6 783,331 + SM_b21220 0.81 -0.6 783,332 - SM_b21220 0.82 +1.0 783,332 - SM_b21220 0.82 +0.5 783,529 + -0.6 783,530 - +0.7
Or see this region's nucleotide sequence