Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21202 and SM_b21203 are separated by 100 nucleotides SM_b21203 and SM_b21666 are separated by 60 nucleotides SM_b21666 and SM_b21204 are separated by 87 nucleotides
SM_b21202: SM_b21202 - hypothetical protein, at 953,953 to 954,885
_b21202
SM_b21203: SM_b21203 - esteraselipase/thioesterase, at 954,986 to 955,588
_b21203
SM_b21666: SM_b21666 - hypothetical protein, at 955,649 to 955,867
_b21666
SM_b21204: SM_b21204 - ABC transporter permease, at 955,955 to 957,067
_b21204
Position (kb) 954
955
956 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 954.088 kb on + strand, within SM_b21202 at 954.089 kb on - strand, within SM_b21202 at 954.089 kb on - strand, within SM_b21202 at 954.089 kb on - strand, within SM_b21202 at 954.089 kb on - strand, within SM_b21202 at 954.097 kb on + strand, within SM_b21202 at 954.097 kb on + strand, within SM_b21202 at 954.097 kb on + strand, within SM_b21202 at 954.098 kb on - strand, within SM_b21202 at 954.098 kb on - strand, within SM_b21202 at 954.098 kb on - strand, within SM_b21202 at 954.100 kb on + strand, within SM_b21202 at 954.100 kb on + strand, within SM_b21202 at 954.101 kb on - strand, within SM_b21202 at 954.101 kb on - strand, within SM_b21202 at 954.139 kb on + strand, within SM_b21202 at 954.428 kb on + strand, within SM_b21202 at 954.428 kb on + strand, within SM_b21202 at 954.434 kb on + strand, within SM_b21202 at 954.435 kb on - strand, within SM_b21202 at 954.435 kb on - strand, within SM_b21202 at 954.478 kb on + strand, within SM_b21202 at 954.706 kb on + strand, within SM_b21202 at 954.883 kb on + strand at 955.001 kb on + strand at 955.001 kb on + strand at 955.002 kb on - strand at 955.002 kb on - strand at 955.002 kb on - strand at 955.002 kb on - strand at 955.117 kb on + strand, within SM_b21203 at 955.117 kb on + strand, within SM_b21203 at 955.143 kb on + strand, within SM_b21203 at 955.193 kb on + strand, within SM_b21203 at 955.193 kb on + strand, within SM_b21203 at 955.194 kb on - strand, within SM_b21203 at 955.292 kb on + strand, within SM_b21203 at 955.293 kb on - strand, within SM_b21203 at 955.487 kb on + strand, within SM_b21203 at 955.487 kb on + strand, within SM_b21203 at 955.487 kb on + strand, within SM_b21203 at 955.488 kb on - strand, within SM_b21203 at 955.488 kb on - strand, within SM_b21203 at 955.611 kb on - strand at 955.611 kb on - strand at 955.635 kb on + strand at 955.636 kb on - strand at 955.776 kb on + strand, within SM_b21666 at 955.870 kb on + strand at 955.871 kb on - strand at 956.054 kb on + strand at 956.055 kb on - strand at 956.055 kb on - strand at 956.094 kb on + strand, within SM_b21204 at 956.095 kb on - strand, within SM_b21204 at 956.274 kb on + strand, within SM_b21204 at 956.350 kb on + strand, within SM_b21204 at 956.352 kb on + strand, within SM_b21204 at 956.352 kb on + strand, within SM_b21204 at 956.352 kb on + strand, within SM_b21204 at 956.352 kb on + strand, within SM_b21204 at 956.352 kb on + strand, within SM_b21204 at 956.352 kb on + strand, within SM_b21204 at 956.353 kb on - strand, within SM_b21204 at 956.353 kb on - strand, within SM_b21204 at 956.353 kb on - strand, within SM_b21204 at 956.551 kb on - strand, within SM_b21204 at 956.551 kb on - strand, within SM_b21204
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 954,088 + SM_b21202 0.14 -0.4 954,089 - SM_b21202 0.15 +0.5 954,089 - SM_b21202 0.15 +1.2 954,089 - SM_b21202 0.15 +0.7 954,089 - SM_b21202 0.15 -2.7 954,097 + SM_b21202 0.15 -0.0 954,097 + SM_b21202 0.15 +0.3 954,097 + SM_b21202 0.15 +1.4 954,098 - SM_b21202 0.16 +1.3 954,098 - SM_b21202 0.16 +3.2 954,098 - SM_b21202 0.16 +2.0 954,100 + SM_b21202 0.16 +0.7 954,100 + SM_b21202 0.16 -1.0 954,101 - SM_b21202 0.16 +1.6 954,101 - SM_b21202 0.16 +0.5 954,139 + SM_b21202 0.20 +0.7 954,428 + SM_b21202 0.51 -0.3 954,428 + SM_b21202 0.51 +1.4 954,434 + SM_b21202 0.52 -0.2 954,435 - SM_b21202 0.52 +0.0 954,435 - SM_b21202 0.52 -1.4 954,478 + SM_b21202 0.56 +0.9 954,706 + SM_b21202 0.81 -2.1 954,883 + +0.9 955,001 + -0.8 955,001 + -0.2 955,002 - -0.5 955,002 - -1.5 955,002 - -1.1 955,002 - +0.4 955,117 + SM_b21203 0.22 +2.4 955,117 + SM_b21203 0.22 +0.3 955,143 + SM_b21203 0.26 +0.8 955,193 + SM_b21203 0.34 +2.6 955,193 + SM_b21203 0.34 +0.7 955,194 - SM_b21203 0.34 -0.6 955,292 + SM_b21203 0.51 +1.4 955,293 - SM_b21203 0.51 -0.1 955,487 + SM_b21203 0.83 -1.2 955,487 + SM_b21203 0.83 +1.6 955,487 + SM_b21203 0.83 -0.8 955,488 - SM_b21203 0.83 -0.3 955,488 - SM_b21203 0.83 -0.8 955,611 - +5.3 955,611 - -2.6 955,635 + +1.2 955,636 - +0.8 955,776 + SM_b21666 0.58 +0.6 955,870 + +0.0 955,871 - +0.6 956,054 + +1.4 956,055 - -1.0 956,055 - -0.0 956,094 + SM_b21204 0.12 -0.2 956,095 - SM_b21204 0.13 -0.0 956,274 + SM_b21204 0.29 +0.3 956,350 + SM_b21204 0.35 -1.0 956,352 + SM_b21204 0.36 +0.9 956,352 + SM_b21204 0.36 -0.4 956,352 + SM_b21204 0.36 +0.7 956,352 + SM_b21204 0.36 -0.2 956,352 + SM_b21204 0.36 +0.1 956,352 + SM_b21204 0.36 +0.5 956,353 - SM_b21204 0.36 +0.9 956,353 - SM_b21204 0.36 -0.2 956,353 - SM_b21204 0.36 -0.0 956,551 - SM_b21204 0.54 -0.5 956,551 - SM_b21204 0.54 +2.1
Or see this region's nucleotide sequence