Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21063 and SM_b21064 overlap by 4 nucleotides SM_b21064 and SM_b21065 are separated by 15 nucleotides SM_b21065 and SM_b21066 overlap by 4 nucleotides
SM_b21063: SM_b21063 - nucleotide-binding protein, at 697,071 to 698,642
_b21063
SM_b21064: SM_b21064 - hypothetical protein, at 698,639 to 699,172
_b21064
SM_b21065: SM_b21065 - hypothetical protein, at 699,188 to 700,165
_b21065
SM_b21066: SM_b21066 - glycosyltransferase, at 700,162 to 701,115
_b21066
Position (kb) 698
699
700 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 697.719 kb on + strand, within SM_b21063 at 697.720 kb on - strand, within SM_b21063 at 697.722 kb on + strand, within SM_b21063 at 697.722 kb on + strand, within SM_b21063 at 697.755 kb on + strand, within SM_b21063 at 697.755 kb on + strand, within SM_b21063 at 697.756 kb on - strand, within SM_b21063 at 697.758 kb on + strand, within SM_b21063 at 697.851 kb on + strand, within SM_b21063 at 697.873 kb on + strand, within SM_b21063 at 697.918 kb on + strand, within SM_b21063 at 697.918 kb on + strand, within SM_b21063 at 697.919 kb on - strand, within SM_b21063 at 697.919 kb on - strand, within SM_b21063 at 698.156 kb on + strand, within SM_b21063 at 698.157 kb on - strand, within SM_b21063 at 698.340 kb on + strand, within SM_b21063 at 698.358 kb on + strand, within SM_b21063 at 698.359 kb on - strand, within SM_b21063 at 698.359 kb on - strand, within SM_b21063 at 698.411 kb on + strand, within SM_b21063 at 698.412 kb on - strand, within SM_b21063 at 698.412 kb on - strand at 698.425 kb on + strand, within SM_b21063 at 698.425 kb on + strand, within SM_b21063 at 698.714 kb on + strand, within SM_b21064 at 698.761 kb on + strand, within SM_b21064 at 698.761 kb on + strand, within SM_b21064 at 698.765 kb on - strand, within SM_b21064 at 698.817 kb on + strand, within SM_b21064 at 698.840 kb on + strand, within SM_b21064 at 698.840 kb on + strand, within SM_b21064 at 698.841 kb on - strand, within SM_b21064 at 698.858 kb on + strand, within SM_b21064 at 698.874 kb on - strand, within SM_b21064 at 698.874 kb on - strand, within SM_b21064 at 699.280 kb on + strand at 699.281 kb on - strand at 699.306 kb on + strand, within SM_b21065 at 699.307 kb on - strand, within SM_b21065 at 699.307 kb on - strand, within SM_b21065 at 699.307 kb on - strand, within SM_b21065 at 699.351 kb on - strand, within SM_b21065 at 699.372 kb on + strand, within SM_b21065 at 699.373 kb on - strand, within SM_b21065 at 699.415 kb on - strand, within SM_b21065 at 699.586 kb on + strand, within SM_b21065 at 699.636 kb on - strand, within SM_b21065 at 699.636 kb on - strand, within SM_b21065 at 699.657 kb on + strand, within SM_b21065 at 699.671 kb on + strand, within SM_b21065 at 699.856 kb on + strand, within SM_b21065 at 699.867 kb on + strand, within SM_b21065 at 699.939 kb on - strand, within SM_b21065 at 699.939 kb on - strand, within SM_b21065 at 699.973 kb on + strand, within SM_b21065 at 699.973 kb on + strand, within SM_b21065 at 699.973 kb on + strand, within SM_b21065 at 699.973 kb on + strand, within SM_b21065 at 699.973 kb on + strand, within SM_b21065 at 699.974 kb on - strand, within SM_b21065 at 699.974 kb on - strand, within SM_b21065 at 700.165 kb on + strand at 700.166 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 697,719 + SM_b21063 0.41 -1.0 697,720 - SM_b21063 0.41 +0.1 697,722 + SM_b21063 0.41 +0.2 697,722 + SM_b21063 0.41 -0.2 697,755 + SM_b21063 0.44 -0.4 697,755 + SM_b21063 0.44 +0.8 697,756 - SM_b21063 0.44 -0.4 697,758 + SM_b21063 0.44 +0.1 697,851 + SM_b21063 0.50 +0.5 697,873 + SM_b21063 0.51 +0.8 697,918 + SM_b21063 0.54 -0.7 697,918 + SM_b21063 0.54 -2.4 697,919 - SM_b21063 0.54 +0.7 697,919 - SM_b21063 0.54 -2.4 698,156 + SM_b21063 0.69 -0.6 698,157 - SM_b21063 0.69 -0.9 698,340 + SM_b21063 0.81 -0.2 698,358 + SM_b21063 0.82 -0.2 698,359 - SM_b21063 0.82 -0.6 698,359 - SM_b21063 0.82 -1.6 698,411 + SM_b21063 0.85 -0.5 698,412 - SM_b21063 0.85 +1.4 698,412 - +1.2 698,425 + SM_b21063 0.86 +0.1 698,425 + SM_b21063 0.86 -1.7 698,714 + SM_b21064 0.14 +1.1 698,761 + SM_b21064 0.23 +0.3 698,761 + SM_b21064 0.23 +0.5 698,765 - SM_b21064 0.24 +1.0 698,817 + SM_b21064 0.33 +1.0 698,840 + SM_b21064 0.38 +0.1 698,840 + SM_b21064 0.38 -0.6 698,841 - SM_b21064 0.38 +0.1 698,858 + SM_b21064 0.41 -0.6 698,874 - SM_b21064 0.44 +1.0 698,874 - SM_b21064 0.44 +0.2 699,280 + +0.2 699,281 - +1.5 699,306 + SM_b21065 0.12 -1.6 699,307 - SM_b21065 0.12 -3.4 699,307 - SM_b21065 0.12 -0.1 699,307 - SM_b21065 0.12 +0.2 699,351 - SM_b21065 0.17 -0.2 699,372 + SM_b21065 0.19 -0.2 699,373 - SM_b21065 0.19 +0.3 699,415 - SM_b21065 0.23 +0.0 699,586 + SM_b21065 0.41 +0.8 699,636 - SM_b21065 0.46 +2.3 699,636 - SM_b21065 0.46 +0.6 699,657 + SM_b21065 0.48 +0.5 699,671 + SM_b21065 0.49 +0.3 699,856 + SM_b21065 0.68 -0.6 699,867 + SM_b21065 0.69 -1.1 699,939 - SM_b21065 0.77 +0.4 699,939 - SM_b21065 0.77 -0.2 699,973 + SM_b21065 0.80 +0.3 699,973 + SM_b21065 0.80 -1.0 699,973 + SM_b21065 0.80 -0.6 699,973 + SM_b21065 0.80 -0.2 699,973 + SM_b21065 0.80 -1.6 699,974 - SM_b21065 0.80 +1.8 699,974 - SM_b21065 0.80 -1.0 700,165 + +0.2 700,166 - -0.6
Or see this region's nucleotide sequence