Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20843 and SM_b21013 are separated by 425 nucleotides SM_b21013 and SM_b21014 are separated by 205 nucleotides SM_b21014 and SM_b21015 are separated by 372 nucleotides
SM_b20843: SM_b20843 - hypothetical protein, at 634,671 to 636,197
_b20843
SM_b21013: SM_b21013 - hypothetical protein, at 636,623 to 637,090
_b21013
SM_b21014: SM_b21014 - hypothetical protein, at 637,296 to 637,676
_b21014
SM_b21015: SM_b21015 - short-chain dehydrogenase, at 638,049 to 639,299
_b21015
Position (kb) 636
637
638 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 635.867 kb on + strand, within SM_b20843 at 635.944 kb on + strand, within SM_b20843 at 635.953 kb on + strand, within SM_b20843 at 635.992 kb on + strand, within SM_b20843 at 636.117 kb on - strand at 636.368 kb on - strand at 636.508 kb on + strand at 636.517 kb on + strand at 636.517 kb on + strand at 636.518 kb on - strand at 636.535 kb on - strand at 636.535 kb on - strand at 636.719 kb on + strand, within SM_b21013 at 636.753 kb on + strand, within SM_b21013 at 636.754 kb on - strand, within SM_b21013 at 636.754 kb on - strand, within SM_b21013 at 636.754 kb on - strand, within SM_b21013 at 637.081 kb on + strand at 637.082 kb on - strand at 637.082 kb on - strand at 637.090 kb on + strand at 637.091 kb on - strand at 637.314 kb on + strand at 637.443 kb on + strand, within SM_b21014 at 637.444 kb on - strand, within SM_b21014 at 637.452 kb on + strand, within SM_b21014 at 637.452 kb on + strand, within SM_b21014 at 637.453 kb on - strand, within SM_b21014 at 637.453 kb on - strand, within SM_b21014 at 637.453 kb on - strand, within SM_b21014 at 637.453 kb on - strand, within SM_b21014 at 637.453 kb on - strand, within SM_b21014 at 637.453 kb on - strand, within SM_b21014 at 637.453 kb on - strand, within SM_b21014 at 637.453 kb on - strand, within SM_b21014 at 637.453 kb on - strand, within SM_b21014 at 637.620 kb on + strand, within SM_b21014 at 637.621 kb on - strand, within SM_b21014 at 637.693 kb on + strand at 637.694 kb on - strand at 637.742 kb on - strand at 637.800 kb on - strand at 637.934 kb on + strand at 638.007 kb on + strand at 638.008 kb on - strand at 638.008 kb on - strand at 638.008 kb on - strand at 638.050 kb on + strand at 638.050 kb on + strand at 638.050 kb on + strand at 638.050 kb on + strand at 638.051 kb on - strand at 638.051 kb on - strand at 638.052 kb on + strand at 638.052 kb on + strand at 638.053 kb on - strand at 638.053 kb on - strand at 638.053 kb on - strand at 638.053 kb on - strand at 638.090 kb on - strand at 638.090 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 635,867 + SM_b20843 0.78 +0.3 635,944 + SM_b20843 0.83 +0.7 635,953 + SM_b20843 0.84 +0.3 635,992 + SM_b20843 0.87 +0.8 636,117 - -0.6 636,368 - -0.7 636,508 + -0.3 636,517 + -1.5 636,517 + +0.7 636,518 - +1.4 636,535 - +0.2 636,535 - +0.2 636,719 + SM_b21013 0.21 -0.6 636,753 + SM_b21013 0.28 -1.4 636,754 - SM_b21013 0.28 +0.2 636,754 - SM_b21013 0.28 -1.1 636,754 - SM_b21013 0.28 +0.2 637,081 + +1.8 637,082 - -0.9 637,082 - -1.0 637,090 + -1.4 637,091 - -2.4 637,314 + +1.8 637,443 + SM_b21014 0.39 +0.4 637,444 - SM_b21014 0.39 +0.9 637,452 + SM_b21014 0.41 +1.5 637,452 + SM_b21014 0.41 +0.8 637,453 - SM_b21014 0.41 -1.8 637,453 - SM_b21014 0.41 -0.2 637,453 - SM_b21014 0.41 -0.8 637,453 - SM_b21014 0.41 +0.5 637,453 - SM_b21014 0.41 +1.8 637,453 - SM_b21014 0.41 +0.4 637,453 - SM_b21014 0.41 +1.6 637,453 - SM_b21014 0.41 -0.3 637,453 - SM_b21014 0.41 +0.7 637,620 + SM_b21014 0.85 +1.8 637,621 - SM_b21014 0.85 +0.6 637,693 + +0.0 637,694 - -0.6 637,742 - +2.1 637,800 - -3.0 637,934 + +2.5 638,007 + -0.2 638,008 - -0.0 638,008 - -0.4 638,008 - +1.1 638,050 + -0.6 638,050 + -0.7 638,050 + +1.8 638,050 + +0.0 638,051 - +0.5 638,051 - -0.5 638,052 + +4.6 638,052 + -0.6 638,053 - -0.1 638,053 - +0.2 638,053 - -0.1 638,053 - +0.7 638,090 - -2.1 638,090 - -0.3
Or see this region's nucleotide sequence