Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20517 and SM_b20518 are separated by 181 nucleotides SM_b20518 and SM_b20519 are separated by 432 nucleotides
SM_b20517: SM_b20517 - hypothetical protein, at 542,357 to 542,647
_b20517
SM_b20518: SM_b20518 - hypothetical protein, at 542,829 to 543,548
_b20518
SM_b20519: SM_b20519 - hypothetical protein, at 543,981 to 544,349
_b20519
Position (kb) 542
543
544 Strain fitness (log2 ratio) -2
-1
0
1
2 at 541.972 kb on - strand at 542.140 kb on + strand at 542.141 kb on - strand at 542.215 kb on - strand at 542.215 kb on - strand at 542.308 kb on + strand at 542.309 kb on - strand at 542.321 kb on + strand at 542.322 kb on - strand at 542.358 kb on + strand at 542.369 kb on + strand at 542.369 kb on + strand at 542.369 kb on + strand at 542.760 kb on - strand at 542.801 kb on - strand at 542.922 kb on + strand, within SM_b20518 at 542.922 kb on + strand, within SM_b20518 at 542.968 kb on - strand, within SM_b20518 at 543.049 kb on - strand, within SM_b20518 at 543.100 kb on - strand, within SM_b20518 at 543.100 kb on - strand, within SM_b20518 at 543.103 kb on + strand, within SM_b20518 at 543.103 kb on + strand, within SM_b20518 at 543.103 kb on + strand, within SM_b20518 at 543.103 kb on + strand, within SM_b20518 at 543.103 kb on + strand, within SM_b20518 at 543.103 kb on + strand, within SM_b20518 at 543.104 kb on - strand, within SM_b20518 at 543.104 kb on - strand, within SM_b20518 at 543.104 kb on - strand, within SM_b20518 at 543.105 kb on + strand, within SM_b20518 at 543.147 kb on + strand, within SM_b20518 at 543.147 kb on + strand, within SM_b20518 at 543.148 kb on - strand at 543.148 kb on - strand, within SM_b20518 at 543.148 kb on - strand, within SM_b20518 at 543.148 kb on - strand, within SM_b20518 at 543.458 kb on - strand, within SM_b20518 at 543.486 kb on - strand at 543.486 kb on - strand at 543.486 kb on - strand at 544.178 kb on - strand, within SM_b20519 at 544.267 kb on + strand, within SM_b20519 at 544.330 kb on + strand at 544.371 kb on + strand at 544.379 kb on + strand at 544.380 kb on - strand at 544.408 kb on + strand at 544.409 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 541,972 - +1.2 542,140 + -0.2 542,141 - +1.8 542,215 - -0.3 542,215 - +1.3 542,308 + +0.2 542,309 - +0.6 542,321 + +0.8 542,322 - +1.8 542,358 + -0.7 542,369 + -1.0 542,369 + +0.5 542,369 + +0.3 542,760 - -0.0 542,801 - -2.0 542,922 + SM_b20518 0.13 -0.6 542,922 + SM_b20518 0.13 +0.1 542,968 - SM_b20518 0.19 -0.0 543,049 - SM_b20518 0.31 -0.5 543,100 - SM_b20518 0.38 +0.3 543,100 - SM_b20518 0.38 +0.2 543,103 + SM_b20518 0.38 -1.3 543,103 + SM_b20518 0.38 -1.6 543,103 + SM_b20518 0.38 -1.4 543,103 + SM_b20518 0.38 -0.8 543,103 + SM_b20518 0.38 -0.9 543,103 + SM_b20518 0.38 -0.5 543,104 - SM_b20518 0.38 +0.0 543,104 - SM_b20518 0.38 +0.8 543,104 - SM_b20518 0.38 -0.8 543,105 + SM_b20518 0.38 -0.4 543,147 + SM_b20518 0.44 -0.3 543,147 + SM_b20518 0.44 -0.1 543,148 - +0.8 543,148 - SM_b20518 0.44 -1.0 543,148 - SM_b20518 0.44 -1.9 543,148 - SM_b20518 0.44 -0.4 543,458 - SM_b20518 0.87 -0.2 543,486 - +0.9 543,486 - -0.6 543,486 - -0.0 544,178 - SM_b20519 0.53 -0.7 544,267 + SM_b20519 0.78 +0.4 544,330 + -0.3 544,371 + -0.4 544,379 + -0.4 544,380 - +0.2 544,408 + -0.1 544,409 - +1.4
Or see this region's nucleotide sequence