Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20442 and SM_b20443 are separated by 67 nucleotides SM_b20443 and SM_b20444 are separated by 5 nucleotides SM_b20444 and SM_b20445 overlap by 1 nucleotides
SM_b20442: SM_b20442 - substrate-binding protein, at 453,287 to 454,261
_b20442
SM_b20443: SM_b20443 - permease, at 454,329 to 454,901
_b20443
SM_b20444: SM_b20444 - hypothetical protein, at 454,907 to 456,313
_b20444
SM_b20445: SM_b20445 - alcohol dehydrogenase, at 456,313 to 457,371
_b20445
Position (kb) 454
455
456
457 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 453.962 kb on - strand, within SM_b20442 at 453.962 kb on - strand, within SM_b20442 at 454.416 kb on + strand, within SM_b20443 at 454.417 kb on - strand, within SM_b20443 at 454.417 kb on - strand, within SM_b20443 at 454.495 kb on - strand, within SM_b20443 at 454.513 kb on - strand, within SM_b20443 at 454.617 kb on + strand, within SM_b20443 at 454.617 kb on + strand, within SM_b20443 at 454.617 kb on + strand at 454.617 kb on + strand, within SM_b20443 at 454.618 kb on - strand, within SM_b20443 at 454.618 kb on - strand, within SM_b20443 at 454.618 kb on - strand, within SM_b20443 at 454.618 kb on - strand, within SM_b20443 at 454.618 kb on - strand, within SM_b20443 at 454.624 kb on - strand, within SM_b20443 at 454.693 kb on - strand, within SM_b20443 at 454.716 kb on + strand, within SM_b20443 at 454.716 kb on + strand, within SM_b20443 at 454.753 kb on + strand, within SM_b20443 at 454.779 kb on + strand, within SM_b20443 at 454.780 kb on - strand, within SM_b20443 at 454.780 kb on - strand, within SM_b20443 at 454.854 kb on + strand at 454.935 kb on + strand at 454.936 kb on - strand at 454.936 kb on - strand at 454.991 kb on + strand at 455.003 kb on + strand at 455.004 kb on - strand at 455.135 kb on + strand, within SM_b20444 at 455.136 kb on - strand, within SM_b20444 at 455.376 kb on - strand, within SM_b20444 at 455.481 kb on - strand, within SM_b20444 at 455.579 kb on + strand, within SM_b20444 at 455.580 kb on - strand, within SM_b20444 at 455.732 kb on - strand, within SM_b20444 at 456.238 kb on + strand at 456.239 kb on - strand at 456.239 kb on - strand at 456.461 kb on - strand, within SM_b20445 at 456.461 kb on - strand, within SM_b20445 at 456.461 kb on - strand, within SM_b20445 at 456.463 kb on + strand, within SM_b20445 at 456.509 kb on + strand, within SM_b20445 at 456.702 kb on + strand, within SM_b20445 at 456.702 kb on + strand, within SM_b20445 at 456.702 kb on + strand, within SM_b20445 at 456.702 kb on + strand, within SM_b20445 at 456.702 kb on + strand, within SM_b20445 at 456.848 kb on + strand, within SM_b20445 at 456.849 kb on - strand, within SM_b20445 at 457.021 kb on + strand, within SM_b20445 at 457.021 kb on + strand, within SM_b20445 at 457.082 kb on + strand, within SM_b20445 at 457.149 kb on + strand, within SM_b20445 at 457.150 kb on - strand, within SM_b20445
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 453,962 - SM_b20442 0.69 +0.1 453,962 - SM_b20442 0.69 -0.6 454,416 + SM_b20443 0.15 +0.1 454,417 - SM_b20443 0.15 +0.3 454,417 - SM_b20443 0.15 +0.9 454,495 - SM_b20443 0.29 +1.0 454,513 - SM_b20443 0.32 +0.4 454,617 + SM_b20443 0.50 +0.5 454,617 + SM_b20443 0.50 -0.0 454,617 + +0.9 454,617 + SM_b20443 0.50 -0.3 454,618 - SM_b20443 0.50 -0.3 454,618 - SM_b20443 0.50 +1.5 454,618 - SM_b20443 0.50 -0.5 454,618 - SM_b20443 0.50 -1.6 454,618 - SM_b20443 0.50 -0.4 454,624 - SM_b20443 0.51 +0.8 454,693 - SM_b20443 0.64 -2.0 454,716 + SM_b20443 0.68 -0.0 454,716 + SM_b20443 0.68 -0.1 454,753 + SM_b20443 0.74 +1.6 454,779 + SM_b20443 0.79 -0.4 454,780 - SM_b20443 0.79 +3.9 454,780 - SM_b20443 0.79 -0.3 454,854 + -0.5 454,935 + +0.4 454,936 - -0.5 454,936 - +1.0 454,991 + -0.3 455,003 + +0.3 455,004 - +0.5 455,135 + SM_b20444 0.16 -0.7 455,136 - SM_b20444 0.16 +0.4 455,376 - SM_b20444 0.33 +1.0 455,481 - SM_b20444 0.41 +1.0 455,579 + SM_b20444 0.48 +2.2 455,580 - SM_b20444 0.48 +2.8 455,732 - SM_b20444 0.59 -0.2 456,238 + +1.5 456,239 - +0.3 456,239 - +3.7 456,461 - SM_b20445 0.14 +0.2 456,461 - SM_b20445 0.14 +0.2 456,461 - SM_b20445 0.14 -0.6 456,463 + SM_b20445 0.14 -0.2 456,509 + SM_b20445 0.19 +1.5 456,702 + SM_b20445 0.37 +2.0 456,702 + SM_b20445 0.37 -0.7 456,702 + SM_b20445 0.37 -0.1 456,702 + SM_b20445 0.37 +0.9 456,702 + SM_b20445 0.37 -1.1 456,848 + SM_b20445 0.51 -0.7 456,849 - SM_b20445 0.51 +0.4 457,021 + SM_b20445 0.67 -0.2 457,021 + SM_b20445 0.67 +1.3 457,082 + SM_b20445 0.73 -0.1 457,149 + SM_b20445 0.79 +0.0 457,150 - SM_b20445 0.79 +1.0
Or see this region's nucleotide sequence