Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20076 and SM_b20077 are separated by 99 nucleotides SM_b20077 and SM_b20078 overlap by 1 nucleotides
SM_b20076: SM_b20076 - short-chain dehydrogenase, at 83,965 to 84,981
_b20076
SM_b20077: SM_b20077 - sensor histidine kinase, at 85,081 to 86,745
_b20077
SM_b20078: SM_b20078 - response regulator, at 86,745 to 87,380
_b20078
Position (kb) 85
86
87 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 84.215 kb on + strand, within SM_b20076 at 84.517 kb on + strand, within SM_b20076 at 84.562 kb on + strand, within SM_b20076 at 84.563 kb on - strand, within SM_b20076 at 84.598 kb on + strand, within SM_b20076 at 84.598 kb on + strand, within SM_b20076 at 84.599 kb on - strand, within SM_b20076 at 85.032 kb on + strand at 85.033 kb on - strand at 85.033 kb on - strand at 85.035 kb on + strand at 85.035 kb on + strand at 85.035 kb on + strand at 85.036 kb on - strand at 85.036 kb on - strand at 85.036 kb on - strand at 85.384 kb on - strand, within SM_b20077 at 85.384 kb on - strand, within SM_b20077 at 85.606 kb on + strand, within SM_b20077 at 85.606 kb on + strand, within SM_b20077 at 85.607 kb on - strand, within SM_b20077 at 85.607 kb on - strand, within SM_b20077 at 85.607 kb on - strand, within SM_b20077 at 85.826 kb on - strand, within SM_b20077 at 86.136 kb on + strand, within SM_b20077 at 86.445 kb on + strand, within SM_b20077 at 86.445 kb on + strand, within SM_b20077 at 86.446 kb on - strand, within SM_b20077 at 86.446 kb on - strand, within SM_b20077 at 86.446 kb on - strand, within SM_b20077 at 86.446 kb on - strand, within SM_b20077 at 86.446 kb on - strand, within SM_b20077 at 86.477 kb on - strand, within SM_b20077 at 86.484 kb on - strand, within SM_b20077 at 86.540 kb on + strand, within SM_b20077 at 86.872 kb on + strand, within SM_b20078 at 86.872 kb on + strand, within SM_b20078 at 87.060 kb on + strand, within SM_b20078 at 87.060 kb on + strand, within SM_b20078 at 87.060 kb on + strand, within SM_b20078 at 87.061 kb on - strand, within SM_b20078 at 87.188 kb on + strand, within SM_b20078 at 87.275 kb on + strand, within SM_b20078 at 87.276 kb on - strand, within SM_b20078 at 87.357 kb on + strand at 87.437 kb on + strand at 87.542 kb on - strand at 87.542 kb on - strand at 87.553 kb on + strand at 87.612 kb on + strand at 87.618 kb on + strand at 87.618 kb on + strand at 87.618 kb on + strand at 87.619 kb on - strand at 87.619 kb on - strand at 87.625 kb on - strand at 87.625 kb on - strand at 87.625 kb on - strand at 87.642 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 84,215 + SM_b20076 0.25 -0.4 84,517 + SM_b20076 0.54 -0.1 84,562 + SM_b20076 0.59 +0.3 84,563 - SM_b20076 0.59 +1.0 84,598 + SM_b20076 0.62 +1.6 84,598 + SM_b20076 0.62 -0.7 84,599 - SM_b20076 0.62 -1.1 85,032 + +0.1 85,033 - -0.3 85,033 - -0.0 85,035 + +0.6 85,035 + +1.4 85,035 + -1.8 85,036 - +0.6 85,036 - +0.1 85,036 - +3.5 85,384 - SM_b20077 0.18 +0.9 85,384 - SM_b20077 0.18 -2.7 85,606 + SM_b20077 0.32 -0.0 85,606 + SM_b20077 0.32 -0.8 85,607 - SM_b20077 0.32 +0.2 85,607 - SM_b20077 0.32 -2.1 85,607 - SM_b20077 0.32 -0.6 85,826 - SM_b20077 0.45 +0.8 86,136 + SM_b20077 0.63 -0.1 86,445 + SM_b20077 0.82 -1.1 86,445 + SM_b20077 0.82 -0.6 86,446 - SM_b20077 0.82 +0.3 86,446 - SM_b20077 0.82 -0.8 86,446 - SM_b20077 0.82 +0.3 86,446 - SM_b20077 0.82 -1.6 86,446 - SM_b20077 0.82 -0.7 86,477 - SM_b20077 0.84 -2.9 86,484 - SM_b20077 0.84 +0.5 86,540 + SM_b20077 0.88 +0.1 86,872 + SM_b20078 0.20 +0.5 86,872 + SM_b20078 0.20 -1.1 87,060 + SM_b20078 0.50 -0.0 87,060 + SM_b20078 0.50 +0.0 87,060 + SM_b20078 0.50 +0.5 87,061 - SM_b20078 0.50 +0.3 87,188 + SM_b20078 0.70 -1.9 87,275 + SM_b20078 0.83 +3.0 87,276 - SM_b20078 0.83 +3.9 87,357 + -1.1 87,437 + +0.9 87,542 - +0.3 87,542 - -0.1 87,553 + -0.7 87,612 + -2.5 87,618 + +0.2 87,618 + -2.0 87,618 + +0.0 87,619 - +1.9 87,619 - -1.4 87,625 - -1.1 87,625 - -2.6 87,625 - +0.9 87,642 + +0.9
Or see this region's nucleotide sequence