Experiment: Cobalt chloride 0.4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2097 and Pf6N2E2_2098 overlap by 4 nucleotides Pf6N2E2_2098 and Pf6N2E2_2099 are separated by 114 nucleotides Pf6N2E2_2099 and Pf6N2E2_2100 are separated by 242 nucleotides
Pf6N2E2_2097 - Fe2+-dicitrate sensor, membrane component, at 2,496,012 to 2,496,971
_2097
Pf6N2E2_2098 - heme uptake regulator, at 2,496,968 to 2,497,489
_2098
Pf6N2E2_2099 - response regulator receiver protein, at 2,497,604 to 2,498,011
_2099
Pf6N2E2_2100 - DNA topoisomerase III (EC 5.99.1.2), at 2,498,254 to 2,500,200
_2100
Position (kb)
2496
2497
2498 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2496.419 kb on + strand, within Pf6N2E2_2097 at 2496.442 kb on - strand, within Pf6N2E2_2097 at 2496.442 kb on - strand, within Pf6N2E2_2097 at 2496.585 kb on + strand, within Pf6N2E2_2097 at 2496.714 kb on + strand, within Pf6N2E2_2097 at 2496.715 kb on - strand, within Pf6N2E2_2097 at 2496.715 kb on - strand, within Pf6N2E2_2097 at 2496.729 kb on + strand, within Pf6N2E2_2097 at 2496.729 kb on + strand, within Pf6N2E2_2097 at 2496.730 kb on - strand, within Pf6N2E2_2097 at 2496.730 kb on - strand, within Pf6N2E2_2097 at 2496.919 kb on + strand at 2496.919 kb on + strand at 2497.031 kb on - strand, within Pf6N2E2_2098 at 2497.120 kb on + strand, within Pf6N2E2_2098 at 2497.236 kb on + strand, within Pf6N2E2_2098 at 2497.236 kb on + strand, within Pf6N2E2_2098 at 2497.236 kb on + strand, within Pf6N2E2_2098 at 2497.237 kb on - strand, within Pf6N2E2_2098 at 2497.302 kb on + strand, within Pf6N2E2_2098 at 2497.303 kb on - strand, within Pf6N2E2_2098 at 2497.303 kb on - strand, within Pf6N2E2_2098 at 2497.582 kb on + strand at 2497.630 kb on + strand at 2497.631 kb on - strand at 2497.837 kb on - strand, within Pf6N2E2_2099 at 2497.976 kb on - strand at 2498.036 kb on - strand at 2498.036 kb on - strand at 2498.069 kb on + strand at 2498.070 kb on - strand at 2498.070 kb on - strand at 2498.178 kb on + strand at 2498.218 kb on + strand at 2498.219 kb on - strand at 2498.219 kb on - strand at 2498.263 kb on + strand at 2498.263 kb on + strand at 2498.263 kb on + strand at 2498.264 kb on - strand at 2498.264 kb on - strand at 2498.264 kb on - strand at 2498.264 kb on - strand at 2498.264 kb on - strand at 2498.264 kb on - strand at 2498.264 kb on - strand at 2498.264 kb on - strand at 2498.408 kb on - strand at 2498.408 kb on - strand at 2498.420 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.4 mM remove 2,496,419 + Pf6N2E2_2097 0.42 +0.4 2,496,442 - Pf6N2E2_2097 0.45 -1.2 2,496,442 - Pf6N2E2_2097 0.45 +1.5 2,496,585 + Pf6N2E2_2097 0.60 -1.7 2,496,714 + Pf6N2E2_2097 0.73 +0.4 2,496,715 - Pf6N2E2_2097 0.73 -1.1 2,496,715 - Pf6N2E2_2097 0.73 -1.2 2,496,729 + Pf6N2E2_2097 0.75 -0.2 2,496,729 + Pf6N2E2_2097 0.75 +1.3 2,496,730 - Pf6N2E2_2097 0.75 -1.0 2,496,730 - Pf6N2E2_2097 0.75 -3.0 2,496,919 + +0.9 2,496,919 + +0.2 2,497,031 - Pf6N2E2_2098 0.12 -0.2 2,497,120 + Pf6N2E2_2098 0.29 +0.1 2,497,236 + Pf6N2E2_2098 0.51 -1.0 2,497,236 + Pf6N2E2_2098 0.51 +1.3 2,497,236 + Pf6N2E2_2098 0.51 -1.4 2,497,237 - Pf6N2E2_2098 0.52 +0.8 2,497,302 + Pf6N2E2_2098 0.64 -1.8 2,497,303 - Pf6N2E2_2098 0.64 -1.8 2,497,303 - Pf6N2E2_2098 0.64 -1.2 2,497,582 + -1.0 2,497,630 + +1.3 2,497,631 - -1.0 2,497,837 - Pf6N2E2_2099 0.57 +0.8 2,497,976 - -0.7 2,498,036 - -2.0 2,498,036 - +0.3 2,498,069 + -1.0 2,498,070 - -1.2 2,498,070 - +1.3 2,498,178 + -1.2 2,498,218 + +0.1 2,498,219 - -2.4 2,498,219 - +0.8 2,498,263 + -0.2 2,498,263 + +0.8 2,498,263 + -1.6 2,498,264 - -0.0 2,498,264 - +0.3 2,498,264 - +0.2 2,498,264 - +0.1 2,498,264 - -0.9 2,498,264 - -1.2 2,498,264 - +0.6 2,498,264 - -1.6 2,498,408 - +1.1 2,498,408 - -0.1 2,498,420 - +0.2
Or see this region's nucleotide sequence