Strain Fitness in Sinorhizobium meliloti 1021 around SMc03831

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03830 and SMc03831 are separated by 204 nucleotidesSMc03831 and SMc03832 are separated by 255 nucleotides SMc03830: SMc03830 - hypothetical protein, at 3,496,500 to 3,497,453 SMc03830 SMc03831: SMc03831 - hypothetical protein, at 3,497,658 to 3,498,893 SMc03831 SMc03832: SMc03832 - signal peptide protein, at 3,499,149 to 3,499,652 SMc03832 Position (kb) 3497 3498 3499Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3496.681 kb on + strand, within SMc03830at 3496.681 kb on + strand, within SMc03830at 3496.682 kb on - strand, within SMc03830at 3496.684 kb on + strand, within SMc03830at 3496.685 kb on - strand, within SMc03830at 3496.685 kb on - strand, within SMc03830at 3496.819 kb on + strand, within SMc03830at 3496.819 kb on + strand, within SMc03830at 3496.819 kb on + strand, within SMc03830at 3496.820 kb on - strand, within SMc03830at 3496.820 kb on - strand, within SMc03830at 3496.820 kb on - strand, within SMc03830at 3496.862 kb on - strand, within SMc03830at 3496.972 kb on + strand, within SMc03830at 3496.978 kb on + strand, within SMc03830at 3496.978 kb on + strand, within SMc03830at 3496.979 kb on - strand, within SMc03830at 3496.983 kb on + strand, within SMc03830at 3496.984 kb on - strand, within SMc03830at 3496.984 kb on - strand, within SMc03830at 3496.984 kb on - strand, within SMc03830at 3497.269 kb on + strand, within SMc03830at 3497.527 kb on + strandat 3497.544 kb on + strandat 3497.798 kb on - strand, within SMc03831at 3497.857 kb on + strand, within SMc03831at 3497.858 kb on - strand, within SMc03831at 3497.977 kb on + strand, within SMc03831at 3497.977 kb on + strand, within SMc03831at 3497.978 kb on - strand, within SMc03831at 3497.978 kb on - strand, within SMc03831at 3498.017 kb on - strand, within SMc03831at 3498.148 kb on + strand, within SMc03831at 3498.290 kb on + strand, within SMc03831at 3498.291 kb on - strand, within SMc03831at 3498.291 kb on - strand, within SMc03831at 3498.514 kb on + strand, within SMc03831at 3498.514 kb on + strand, within SMc03831at 3498.515 kb on - strand, within SMc03831at 3498.515 kb on - strand, within SMc03831at 3498.706 kb on + strand, within SMc03831at 3498.873 kb on + strandat 3498.874 kb on - strandat 3499.032 kb on + strandat 3499.033 kb on - strandat 3499.033 kb on - strandat 3499.740 kb on - strandat 3499.875 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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3,496,681 + SMc03830 0.19 +0.7
3,496,681 + SMc03830 0.19 -0.7
3,496,682 - SMc03830 0.19 +1.9
3,496,684 + SMc03830 0.19 -2.4
3,496,685 - SMc03830 0.19 +0.4
3,496,685 - SMc03830 0.19 -0.1
3,496,819 + SMc03830 0.33 +1.6
3,496,819 + SMc03830 0.33 +0.1
3,496,819 + SMc03830 0.33 +0.1
3,496,820 - SMc03830 0.34 -0.0
3,496,820 - SMc03830 0.34 +2.2
3,496,820 - SMc03830 0.34 +1.3
3,496,862 - SMc03830 0.38 -0.4
3,496,972 + SMc03830 0.49 -1.8
3,496,978 + SMc03830 0.50 +0.4
3,496,978 + SMc03830 0.50 -0.4
3,496,979 - SMc03830 0.50 -0.6
3,496,983 + SMc03830 0.51 -0.1
3,496,984 - SMc03830 0.51 +1.1
3,496,984 - SMc03830 0.51 +1.0
3,496,984 - SMc03830 0.51 +1.0
3,497,269 + SMc03830 0.81 +0.3
3,497,527 + -0.6
3,497,544 + +1.9
3,497,798 - SMc03831 0.11 +0.7
3,497,857 + SMc03831 0.16 +0.9
3,497,858 - SMc03831 0.16 -1.7
3,497,977 + SMc03831 0.26 +0.9
3,497,977 + SMc03831 0.26 +0.4
3,497,978 - SMc03831 0.26 +0.8
3,497,978 - SMc03831 0.26 +1.2
3,498,017 - SMc03831 0.29 +0.9
3,498,148 + SMc03831 0.40 +1.4
3,498,290 + SMc03831 0.51 -0.3
3,498,291 - SMc03831 0.51 +1.5
3,498,291 - SMc03831 0.51 +1.2
3,498,514 + SMc03831 0.69 +1.1
3,498,514 + SMc03831 0.69 +0.1
3,498,515 - SMc03831 0.69 +4.2
3,498,515 - SMc03831 0.69 +0.3
3,498,706 + SMc03831 0.85 -0.3
3,498,873 + -0.6
3,498,874 - -1.4
3,499,032 + -0.4
3,499,033 - +0.7
3,499,033 - +0.5
3,499,740 - +1.3
3,499,875 - +1.8

Or see this region's nucleotide sequence