Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03830 and SMc03831 are separated by 204 nucleotides SMc03831 and SMc03832 are separated by 255 nucleotides
SMc03830: SMc03830 - hypothetical protein, at 3,496,500 to 3,497,453
SMc03830
SMc03831: SMc03831 - hypothetical protein, at 3,497,658 to 3,498,893
SMc03831
SMc03832: SMc03832 - signal peptide protein, at 3,499,149 to 3,499,652
SMc03832
Position (kb)
3497
3498
3499 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3496.681 kb on + strand, within SMc03830 at 3496.681 kb on + strand, within SMc03830 at 3496.682 kb on - strand, within SMc03830 at 3496.684 kb on + strand, within SMc03830 at 3496.685 kb on - strand, within SMc03830 at 3496.685 kb on - strand, within SMc03830 at 3496.819 kb on + strand, within SMc03830 at 3496.819 kb on + strand, within SMc03830 at 3496.819 kb on + strand, within SMc03830 at 3496.820 kb on - strand, within SMc03830 at 3496.820 kb on - strand, within SMc03830 at 3496.820 kb on - strand, within SMc03830 at 3496.862 kb on - strand, within SMc03830 at 3496.972 kb on + strand, within SMc03830 at 3496.978 kb on + strand, within SMc03830 at 3496.978 kb on + strand, within SMc03830 at 3496.979 kb on - strand, within SMc03830 at 3496.983 kb on + strand, within SMc03830 at 3496.984 kb on - strand, within SMc03830 at 3496.984 kb on - strand, within SMc03830 at 3496.984 kb on - strand, within SMc03830 at 3497.269 kb on + strand, within SMc03830 at 3497.527 kb on + strand at 3497.544 kb on + strand at 3497.798 kb on - strand, within SMc03831 at 3497.857 kb on + strand, within SMc03831 at 3497.858 kb on - strand, within SMc03831 at 3497.977 kb on + strand, within SMc03831 at 3497.977 kb on + strand, within SMc03831 at 3497.978 kb on - strand, within SMc03831 at 3497.978 kb on - strand, within SMc03831 at 3498.017 kb on - strand, within SMc03831 at 3498.148 kb on + strand, within SMc03831 at 3498.290 kb on + strand, within SMc03831 at 3498.291 kb on - strand, within SMc03831 at 3498.291 kb on - strand, within SMc03831 at 3498.514 kb on + strand, within SMc03831 at 3498.514 kb on + strand, within SMc03831 at 3498.515 kb on - strand, within SMc03831 at 3498.515 kb on - strand, within SMc03831 at 3498.706 kb on + strand, within SMc03831 at 3498.873 kb on + strand at 3498.874 kb on - strand at 3499.032 kb on + strand at 3499.033 kb on - strand at 3499.033 kb on - strand at 3499.740 kb on - strand at 3499.875 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 3,496,681 + SMc03830 0.19 +0.7 3,496,681 + SMc03830 0.19 -0.7 3,496,682 - SMc03830 0.19 +1.9 3,496,684 + SMc03830 0.19 -2.4 3,496,685 - SMc03830 0.19 +0.4 3,496,685 - SMc03830 0.19 -0.1 3,496,819 + SMc03830 0.33 +1.6 3,496,819 + SMc03830 0.33 +0.1 3,496,819 + SMc03830 0.33 +0.1 3,496,820 - SMc03830 0.34 -0.0 3,496,820 - SMc03830 0.34 +2.2 3,496,820 - SMc03830 0.34 +1.3 3,496,862 - SMc03830 0.38 -0.4 3,496,972 + SMc03830 0.49 -1.8 3,496,978 + SMc03830 0.50 +0.4 3,496,978 + SMc03830 0.50 -0.4 3,496,979 - SMc03830 0.50 -0.6 3,496,983 + SMc03830 0.51 -0.1 3,496,984 - SMc03830 0.51 +1.1 3,496,984 - SMc03830 0.51 +1.0 3,496,984 - SMc03830 0.51 +1.0 3,497,269 + SMc03830 0.81 +0.3 3,497,527 + -0.6 3,497,544 + +1.9 3,497,798 - SMc03831 0.11 +0.7 3,497,857 + SMc03831 0.16 +0.9 3,497,858 - SMc03831 0.16 -1.7 3,497,977 + SMc03831 0.26 +0.9 3,497,977 + SMc03831 0.26 +0.4 3,497,978 - SMc03831 0.26 +0.8 3,497,978 - SMc03831 0.26 +1.2 3,498,017 - SMc03831 0.29 +0.9 3,498,148 + SMc03831 0.40 +1.4 3,498,290 + SMc03831 0.51 -0.3 3,498,291 - SMc03831 0.51 +1.5 3,498,291 - SMc03831 0.51 +1.2 3,498,514 + SMc03831 0.69 +1.1 3,498,514 + SMc03831 0.69 +0.1 3,498,515 - SMc03831 0.69 +4.2 3,498,515 - SMc03831 0.69 +0.3 3,498,706 + SMc03831 0.85 -0.3 3,498,873 + -0.6 3,498,874 - -1.4 3,499,032 + -0.4 3,499,033 - +0.7 3,499,033 - +0.5 3,499,740 - +1.3 3,499,875 - +1.8
Or see this region's nucleotide sequence