Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02902 and SMc02903 are separated by 6 nucleotides SMc02903 and SMc02904 are separated by 2 nucleotides SMc02904 and SMc02905 overlap by 20 nucleotides
SMc02902: SMc02902 - transcriptional regulator, at 257,736 to 258,428
SMc02902
SMc02903: SMc02903 - hypothetical protein, at 258,435 to 259,415
SMc02903
SMc02904: SMc02904 - hypothetical protein, at 259,418 to 260,143
SMc02904
SMc02905: SMc02905 - DNA polymerase III subunits gamma and tau, at 260,124 to 262,004
SMc02905
Position (kb) 259
260
261 Strain fitness (log2 ratio) -2
-1
0
1
2 at 258.637 kb on + strand, within SMc02903 at 258.637 kb on + strand, within SMc02903 at 258.689 kb on - strand, within SMc02903 at 258.790 kb on + strand, within SMc02903 at 258.790 kb on + strand, within SMc02903 at 258.848 kb on - strand, within SMc02903 at 258.908 kb on + strand, within SMc02903 at 258.908 kb on + strand, within SMc02903 at 259.052 kb on - strand, within SMc02903 at 259.453 kb on + strand at 259.453 kb on + strand at 259.453 kb on + strand at 259.453 kb on + strand at 259.454 kb on - strand at 259.454 kb on - strand at 259.454 kb on - strand at 259.688 kb on + strand, within SMc02904 at 259.688 kb on + strand, within SMc02904 at 259.689 kb on - strand, within SMc02904 at 259.866 kb on + strand, within SMc02904
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 258,637 + SMc02903 0.21 -0.2 258,637 + SMc02903 0.21 -2.0 258,689 - SMc02903 0.26 -0.5 258,790 + SMc02903 0.36 +0.1 258,790 + SMc02903 0.36 +0.9 258,848 - SMc02903 0.42 +1.6 258,908 + SMc02903 0.48 -0.2 258,908 + SMc02903 0.48 +0.2 259,052 - SMc02903 0.63 +0.7 259,453 + -2.0 259,453 + +0.0 259,453 + -0.0 259,453 + -1.2 259,454 - +1.0 259,454 - -2.3 259,454 - -0.9 259,688 + SMc02904 0.37 +0.9 259,688 + SMc02904 0.37 +0.7 259,689 - SMc02904 0.37 +2.5 259,866 + SMc02904 0.62 +1.2
Or see this region's nucleotide sequence