Strain Fitness in Sinorhizobium meliloti 1021 around SMc02591

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02590 and SMc02591 overlap by 50 nucleotidesSMc02591 and SMc02592 overlap by 4 nucleotidesSMc02592 and SMc02593 overlap by 4 nucleotides SMc02590: SMc02590 - hypothetical protein, at 88,119 to 89,423 SMc02590 SMc02591: SMc02591 - hypothetical protein, at 89,374 to 89,913 SMc02591 SMc02592: SMc02592 - hypothetical protein, at 89,910 to 90,503 SMc02592 SMc02593: SMc02593 - hypothetical protein, at 90,500 to 91,132 SMc02593 Position (kb) 89 90Strain fitness (log2 ratio) -2 -1 0 1at 88.388 kb on + strand, within SMc02590at 88.470 kb on + strand, within SMc02590at 88.471 kb on - strand, within SMc02590at 88.713 kb on + strand, within SMc02590at 88.725 kb on - strand, within SMc02590at 88.725 kb on - strand, within SMc02590at 88.725 kb on - strand, within SMc02590at 88.725 kb on - strand, within SMc02590at 88.744 kb on + strand, within SMc02590at 88.745 kb on - strand, within SMc02590at 88.776 kb on - strand, within SMc02590at 88.890 kb on + strand, within SMc02590at 88.891 kb on - strand, within SMc02590at 89.055 kb on + strand, within SMc02590at 89.218 kb on + strand, within SMc02590at 89.219 kb on - strand, within SMc02590at 89.319 kb on + strandat 89.361 kb on + strandat 89.361 kb on + strandat 89.545 kb on + strand, within SMc02591at 89.716 kb on + strand, within SMc02591at 89.717 kb on - strand, within SMc02591at 89.860 kb on + strandat 89.860 kb on - strandat 89.861 kb on - strandat 89.876 kb on + strandat 89.975 kb on - strand, within SMc02592at 90.033 kb on + strand, within SMc02592at 90.033 kb on + strand, within SMc02592at 90.059 kb on + strand, within SMc02592at 90.059 kb on + strand, within SMc02592at 90.155 kb on + strand, within SMc02592at 90.286 kb on + strand, within SMc02592at 90.287 kb on - strand, within SMc02592at 90.287 kb on - strand, within SMc02592at 90.424 kb on + strand, within SMc02592at 90.424 kb on + strand, within SMc02592at 90.424 kb on + strand, within SMc02592at 90.425 kb on - strand, within SMc02592at 90.486 kb on - strandat 90.546 kb on - strandat 90.738 kb on + strand, within SMc02593at 90.739 kb on - strand, within SMc02593at 90.739 kb on - strand, within SMc02593

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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88,388 + SMc02590 0.21 -0.4
88,470 + SMc02590 0.27 -0.5
88,471 - SMc02590 0.27 +0.2
88,713 + SMc02590 0.46 -0.3
88,725 - SMc02590 0.46 +1.0
88,725 - SMc02590 0.46 -0.9
88,725 - SMc02590 0.46 +0.6
88,725 - SMc02590 0.46 -0.0
88,744 + SMc02590 0.48 -0.0
88,745 - SMc02590 0.48 +1.2
88,776 - SMc02590 0.50 +1.2
88,890 + SMc02590 0.59 +1.5
88,891 - SMc02590 0.59 +1.0
89,055 + SMc02590 0.72 +0.4
89,218 + SMc02590 0.84 -0.2
89,219 - SMc02590 0.84 -0.3
89,319 + -0.3
89,361 + -0.6
89,361 + +0.9
89,545 + SMc02591 0.32 -0.9
89,716 + SMc02591 0.63 -0.6
89,717 - SMc02591 0.64 -0.9
89,860 + +0.0
89,860 - +0.2
89,861 - +0.2
89,876 + +0.1
89,975 - SMc02592 0.11 +0.7
90,033 + SMc02592 0.21 -1.0
90,033 + SMc02592 0.21 +0.4
90,059 + SMc02592 0.25 -0.9
90,059 + SMc02592 0.25 +0.2
90,155 + SMc02592 0.41 -1.4
90,286 + SMc02592 0.63 +0.6
90,287 - SMc02592 0.63 +1.1
90,287 - SMc02592 0.63 +0.3
90,424 + SMc02592 0.87 -0.1
90,424 + SMc02592 0.87 -1.9
90,424 + SMc02592 0.87 +0.6
90,425 - SMc02592 0.87 -0.9
90,486 - +1.5
90,546 - -0.7
90,738 + SMc02593 0.38 -0.5
90,739 - SMc02593 0.38 +1.2
90,739 - SMc02593 0.38 -0.5

Or see this region's nucleotide sequence