Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02282 and SMc02283 are separated by 39 nucleotides SMc02283 and SMc02284 are separated by 21 nucleotides SMc02284 and SMc02285 are separated by 96 nucleotides SMc02285 and SMc02326 are separated by 264 nucleotides
SMc02282: SMc02282 - copper-containing oxidoreductase, at 655,077 to 656,426
SMc02282
SMc02283: SMc02283 - copper-containing oxidoreductase signal peptide protein, at 656,466 to 656,945
SMc02283
SMc02284: SMc02284 - signal peptide protein, at 656,967 to 657,251
SMc02284
SMc02285: SMc02285 - adenylate cyclase transmembrane protein, at 657,348 to 658,595
SMc02285
SMc02326: SMc02326 - hypothetical protein, at 658,860 to 659,342
SMc02326
Position (kb) 657
658
659 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 656.462 kb on + strand at 656.462 kb on + strand at 656.463 kb on - strand at 656.902 kb on - strand at 656.943 kb on + strand at 656.943 kb on + strand at 656.943 kb on + strand at 657.022 kb on - strand, within SMc02284 at 657.249 kb on + strand at 657.250 kb on - strand at 657.321 kb on + strand at 657.354 kb on + strand at 657.354 kb on + strand at 657.354 kb on + strand at 657.355 kb on - strand at 657.355 kb on - strand at 657.355 kb on - strand at 657.356 kb on + strand at 657.357 kb on - strand at 657.357 kb on - strand at 657.357 kb on - strand at 657.498 kb on + strand, within SMc02285 at 657.499 kb on - strand, within SMc02285 at 657.610 kb on - strand, within SMc02285 at 657.610 kb on - strand, within SMc02285 at 657.615 kb on + strand, within SMc02285 at 657.615 kb on + strand, within SMc02285 at 657.615 kb on + strand, within SMc02285 at 657.616 kb on - strand, within SMc02285 at 657.616 kb on - strand, within SMc02285 at 657.616 kb on - strand, within SMc02285 at 657.616 kb on - strand, within SMc02285 at 657.616 kb on - strand, within SMc02285 at 657.617 kb on + strand, within SMc02285 at 657.618 kb on - strand, within SMc02285 at 657.645 kb on - strand, within SMc02285 at 657.879 kb on + strand, within SMc02285 at 657.879 kb on + strand, within SMc02285 at 658.335 kb on + strand, within SMc02285 at 658.393 kb on + strand, within SMc02285 at 658.652 kb on + strand at 658.652 kb on + strand at 658.653 kb on - strand at 658.653 kb on - strand at 658.734 kb on - strand at 658.887 kb on + strand at 658.887 kb on + strand at 658.887 kb on + strand at 658.887 kb on + strand at 658.887 kb on + strand at 658.887 kb on + strand at 658.953 kb on + strand, within SMc02326 at 659.048 kb on + strand, within SMc02326 at 659.049 kb on - strand, within SMc02326 at 659.049 kb on - strand, within SMc02326 at 659.049 kb on - strand, within SMc02326 at 659.090 kb on - strand, within SMc02326 at 659.152 kb on + strand, within SMc02326 at 659.180 kb on + strand, within SMc02326 at 659.181 kb on - strand, within SMc02326 at 659.181 kb on - strand, within SMc02326 at 659.187 kb on - strand, within SMc02326 at 659.210 kb on + strand, within SMc02326 at 659.414 kb on + strand at 659.415 kb on - strand at 659.415 kb on - strand at 659.456 kb on + strand at 659.456 kb on + strand at 659.456 kb on + strand at 659.456 kb on + strand at 659.456 kb on + strand at 659.457 kb on - strand at 659.457 kb on - strand at 659.462 kb on + strand at 659.462 kb on + strand at 659.463 kb on - strand at 659.468 kb on + strand at 659.469 kb on - strand at 659.590 kb on + strand at 659.590 kb on + strand at 659.591 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 656,462 + -0.0 656,462 + +0.4 656,463 - +1.0 656,902 - +0.3 656,943 + +0.4 656,943 + -0.7 656,943 + +0.3 657,022 - SMc02284 0.19 +1.1 657,249 + -0.5 657,250 - -0.8 657,321 + +0.4 657,354 + -0.2 657,354 + -3.6 657,354 + -2.1 657,355 - -0.6 657,355 - +0.2 657,355 - -0.8 657,356 + +0.3 657,357 - -0.9 657,357 - -1.0 657,357 - +1.5 657,498 + SMc02285 0.12 -1.6 657,499 - SMc02285 0.12 -1.0 657,610 - SMc02285 0.21 -1.2 657,610 - SMc02285 0.21 +0.2 657,615 + SMc02285 0.21 +0.7 657,615 + SMc02285 0.21 +0.3 657,615 + SMc02285 0.21 -0.0 657,616 - SMc02285 0.21 -0.7 657,616 - SMc02285 0.21 -0.6 657,616 - SMc02285 0.21 -1.1 657,616 - SMc02285 0.21 -0.9 657,616 - SMc02285 0.21 -0.0 657,617 + SMc02285 0.22 -1.2 657,618 - SMc02285 0.22 +0.2 657,645 - SMc02285 0.24 -0.6 657,879 + SMc02285 0.43 -0.7 657,879 + SMc02285 0.43 -0.6 658,335 + SMc02285 0.79 -1.1 658,393 + SMc02285 0.84 -1.3 658,652 + +1.8 658,652 + +0.1 658,653 - -0.1 658,653 - -0.5 658,734 - +1.8 658,887 + +0.2 658,887 + -0.3 658,887 + +2.6 658,887 + -1.0 658,887 + -0.5 658,887 + -1.2 658,953 + SMc02326 0.19 +0.1 659,048 + SMc02326 0.39 +0.2 659,049 - SMc02326 0.39 -0.7 659,049 - SMc02326 0.39 -0.1 659,049 - SMc02326 0.39 +0.8 659,090 - SMc02326 0.48 -0.3 659,152 + SMc02326 0.60 -1.0 659,180 + SMc02326 0.66 -1.7 659,181 - SMc02326 0.66 -1.9 659,181 - SMc02326 0.66 -0.7 659,187 - SMc02326 0.68 -0.6 659,210 + SMc02326 0.72 -0.6 659,414 + -0.2 659,415 - -1.4 659,415 - -0.6 659,456 + +0.2 659,456 + -0.3 659,456 + +0.5 659,456 + +0.2 659,456 + +1.4 659,457 - +1.1 659,457 - +0.3 659,462 + -2.3 659,462 + +4.0 659,463 - -0.3 659,468 + +1.5 659,469 - -0.2 659,590 + -0.4 659,590 + +0.0 659,591 - +0.3
Or see this region's nucleotide sequence