Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02057 and SMc02056 overlap by 4 nucleotides SMc02056 and SMc02055 are separated by 21 nucleotides SMc02055 and SMc02054 are separated by 94 nucleotides SMc02054 and SMc02053 are separated by 29 nucleotides
SMc02057: SMc02057 - preprotein translocase subunit SecD/SecF, at 1,660,365 to 1,662,941
SMc02057
SMc02056: SMc02056 - hypothetical protein, at 1,662,938 to 1,663,330
SMc02056
SMc02055: SMc02055 - phytoene synthase, at 1,663,352 to 1,664,194
SMc02055
SMc02054: SMc02054 - hypothetical protein, at 1,664,289 to 1,664,744
SMc02054
SMc02053: SMc02053 - tRNA (uracil-5-)-methyltransferase Gid, at 1,664,774 to 1,666,192
SMc02053
Position (kb) 1663
1664
1665 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1662.432 kb on + strand, within SMc02057 at 1662.432 kb on + strand, within SMc02057 at 1662.607 kb on - strand, within SMc02057 at 1662.742 kb on - strand at 1662.742 kb on - strand at 1662.742 kb on - strand at 1662.790 kb on + strand at 1662.825 kb on + strand at 1662.825 kb on + strand at 1663.074 kb on + strand, within SMc02056 at 1663.075 kb on - strand, within SMc02056 at 1663.075 kb on - strand, within SMc02056 at 1663.075 kb on - strand, within SMc02056 at 1663.076 kb on + strand at 1663.077 kb on - strand, within SMc02056 at 1663.077 kb on - strand, within SMc02056 at 1663.274 kb on + strand, within SMc02056 at 1663.274 kb on + strand, within SMc02056 at 1663.274 kb on + strand, within SMc02056 at 1663.274 kb on + strand, within SMc02056 at 1663.275 kb on - strand, within SMc02056 at 1663.276 kb on + strand, within SMc02056 at 1663.276 kb on + strand, within SMc02056 at 1663.463 kb on + strand, within SMc02055 at 1663.679 kb on + strand, within SMc02055 at 1663.719 kb on - strand, within SMc02055 at 1663.719 kb on - strand, within SMc02055 at 1664.242 kb on - strand at 1664.242 kb on - strand at 1664.272 kb on - strand at 1664.337 kb on + strand, within SMc02054 at 1664.337 kb on + strand, within SMc02054 at 1664.337 kb on + strand, within SMc02054 at 1664.338 kb on - strand, within SMc02054 at 1664.338 kb on - strand, within SMc02054 at 1664.338 kb on - strand, within SMc02054 at 1664.339 kb on + strand, within SMc02054 at 1664.340 kb on - strand, within SMc02054 at 1664.506 kb on + strand, within SMc02054 at 1664.506 kb on + strand, within SMc02054 at 1664.506 kb on + strand, within SMc02054 at 1664.506 kb on + strand, within SMc02054 at 1664.506 kb on + strand, within SMc02054 at 1664.507 kb on - strand, within SMc02054 at 1664.526 kb on + strand, within SMc02054 at 1664.526 kb on + strand at 1664.526 kb on + strand, within SMc02054 at 1664.527 kb on - strand, within SMc02054 at 1664.527 kb on - strand, within SMc02054 at 1664.527 kb on - strand, within SMc02054 at 1664.590 kb on + strand, within SMc02054 at 1664.590 kb on + strand, within SMc02054 at 1665.111 kb on + strand, within SMc02053 at 1665.112 kb on - strand, within SMc02053
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 1,662,432 + SMc02057 0.80 +0.5 1,662,432 + SMc02057 0.80 -0.6 1,662,607 - SMc02057 0.87 +1.6 1,662,742 - -2.8 1,662,742 - -2.8 1,662,742 - -2.2 1,662,790 + -0.5 1,662,825 + +0.5 1,662,825 + +0.3 1,663,074 + SMc02056 0.35 +0.5 1,663,075 - SMc02056 0.35 -2.4 1,663,075 - SMc02056 0.35 -0.7 1,663,075 - SMc02056 0.35 +0.9 1,663,076 + +0.0 1,663,077 - SMc02056 0.35 -2.1 1,663,077 - SMc02056 0.35 +0.0 1,663,274 + SMc02056 0.85 -0.8 1,663,274 + SMc02056 0.85 +0.9 1,663,274 + SMc02056 0.85 -0.3 1,663,274 + SMc02056 0.85 +0.6 1,663,275 - SMc02056 0.86 -2.2 1,663,276 + SMc02056 0.86 +0.9 1,663,276 + SMc02056 0.86 -0.6 1,663,463 + SMc02055 0.13 +0.6 1,663,679 + SMc02055 0.39 -2.1 1,663,719 - SMc02055 0.44 -1.5 1,663,719 - SMc02055 0.44 -1.6 1,664,242 - +0.0 1,664,242 - +2.1 1,664,272 - -2.0 1,664,337 + SMc02054 0.11 -0.3 1,664,337 + SMc02054 0.11 -1.0 1,664,337 + SMc02054 0.11 +1.4 1,664,338 - SMc02054 0.11 +3.4 1,664,338 - SMc02054 0.11 +0.1 1,664,338 - SMc02054 0.11 +1.3 1,664,339 + SMc02054 0.11 +1.1 1,664,340 - SMc02054 0.11 -0.5 1,664,506 + SMc02054 0.48 +1.0 1,664,506 + SMc02054 0.48 -0.5 1,664,506 + SMc02054 0.48 +0.5 1,664,506 + SMc02054 0.48 -2.5 1,664,506 + SMc02054 0.48 +0.0 1,664,507 - SMc02054 0.48 -0.1 1,664,526 + SMc02054 0.52 -1.4 1,664,526 + +3.2 1,664,526 + SMc02054 0.52 -2.7 1,664,527 - SMc02054 0.52 -0.4 1,664,527 - SMc02054 0.52 -0.3 1,664,527 - SMc02054 0.52 -0.4 1,664,590 + SMc02054 0.66 -1.6 1,664,590 + SMc02054 0.66 +0.0 1,665,111 + SMc02053 0.24 +0.3 1,665,112 - SMc02053 0.24 +1.2
Or see this region's nucleotide sequence