Strain Fitness in Sinorhizobium meliloti 1021 around SMc01964

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01962 and SMc01963 overlap by 4 nucleotidesSMc01963 and SMc01964 overlap by 4 nucleotidesSMc01964 and SMc01965 overlap by 4 nucleotides SMc01962: SMc01962 - hypothetical protein, at 2,684,402 to 2,685,181 SMc01962 SMc01963: SMc01963 - spermidine/putrescine ABC transporter permease, at 2,685,178 to 2,685,978 SMc01963 SMc01964: SMc01964 - spermidine/putrescine ABC transporter permease, at 2,685,975 to 2,686,829 SMc01964 SMc01965: SMc01965 - spermidine/putrescine ABC transporter ATP-binding protein, at 2,686,826 to 2,687,863 SMc01965 Position (kb) 2685 2686 2687Strain fitness (log2 ratio) -2 -1 0 1 2at 2685.303 kb on - strand, within SMc01963at 2685.369 kb on - strand, within SMc01963at 2685.369 kb on - strand, within SMc01963at 2685.369 kb on - strand, within SMc01963at 2685.369 kb on - strand, within SMc01963at 2685.377 kb on - strand, within SMc01963at 2685.378 kb on + strand, within SMc01963at 2685.378 kb on + strand, within SMc01963at 2685.378 kb on + strand, within SMc01963at 2685.379 kb on - strand, within SMc01963at 2685.379 kb on - strand, within SMc01963at 2685.380 kb on + strand, within SMc01963at 2685.428 kb on + strand, within SMc01963at 2685.429 kb on - strand, within SMc01963at 2685.606 kb on - strand, within SMc01963at 2685.849 kb on + strand, within SMc01963at 2685.953 kb on + strandat 2685.954 kb on - strandat 2685.954 kb on - strandat 2685.954 kb on - strandat 2685.954 kb on - strandat 2686.085 kb on - strand, within SMc01964at 2686.085 kb on - strand, within SMc01964at 2686.156 kb on + strand, within SMc01964at 2686.156 kb on + strand, within SMc01964at 2686.157 kb on - strand, within SMc01964at 2686.330 kb on + strand, within SMc01964at 2686.403 kb on + strand, within SMc01964at 2686.403 kb on + strand, within SMc01964at 2686.404 kb on - strand, within SMc01964at 2686.452 kb on + strand, within SMc01964at 2686.559 kb on - strand, within SMc01964at 2686.663 kb on + strand, within SMc01964at 2686.663 kb on + strand, within SMc01964at 2686.664 kb on - strand, within SMc01964at 2686.690 kb on + strand, within SMc01964at 2686.690 kb on + strand, within SMc01964at 2686.691 kb on - strand, within SMc01964at 2687.258 kb on - strand, within SMc01965at 2687.644 kb on + strand, within SMc01965at 2687.645 kb on - strand, within SMc01965

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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2,685,303 - SMc01963 0.16 -0.4
2,685,369 - SMc01963 0.24 -0.2
2,685,369 - SMc01963 0.24 +0.4
2,685,369 - SMc01963 0.24 +0.2
2,685,369 - SMc01963 0.24 +0.5
2,685,377 - SMc01963 0.25 +1.5
2,685,378 + SMc01963 0.25 -0.9
2,685,378 + SMc01963 0.25 +0.8
2,685,378 + SMc01963 0.25 +0.0
2,685,379 - SMc01963 0.25 -0.2
2,685,379 - SMc01963 0.25 +0.6
2,685,380 + SMc01963 0.25 -1.6
2,685,428 + SMc01963 0.31 +0.4
2,685,429 - SMc01963 0.31 -0.7
2,685,606 - SMc01963 0.53 +0.5
2,685,849 + SMc01963 0.84 -0.5
2,685,953 + -0.1
2,685,954 - +0.3
2,685,954 - -1.5
2,685,954 - -1.7
2,685,954 - -1.4
2,686,085 - SMc01964 0.13 -1.2
2,686,085 - SMc01964 0.13 +0.2
2,686,156 + SMc01964 0.21 +0.7
2,686,156 + SMc01964 0.21 -1.8
2,686,157 - SMc01964 0.21 +0.6
2,686,330 + SMc01964 0.42 -1.0
2,686,403 + SMc01964 0.50 -0.1
2,686,403 + SMc01964 0.50 -1.3
2,686,404 - SMc01964 0.50 -0.2
2,686,452 + SMc01964 0.56 -0.9
2,686,559 - SMc01964 0.68 +1.9
2,686,663 + SMc01964 0.80 -0.7
2,686,663 + SMc01964 0.80 +2.2
2,686,664 - SMc01964 0.81 -0.4
2,686,690 + SMc01964 0.84 -0.8
2,686,690 + SMc01964 0.84 -0.2
2,686,691 - SMc01964 0.84 -1.1
2,687,258 - SMc01965 0.42 +0.3
2,687,644 + SMc01965 0.79 -0.4
2,687,645 - SMc01965 0.79 +1.2

Or see this region's nucleotide sequence