Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01715 and SMc01714 are separated by 192 nucleotides SMc01714 and SMc01713 are separated by 208 nucleotides SMc01713 and SMc01712 are separated by 21 nucleotides
SMc01715: SMc01715 - hypothetical protein, at 489,742 to 490,437
SMc01715
SMc01714: SMc01714 - hypothetical protein, at 490,630 to 491,118
SMc01714
SMc01713: SMc01713 - hypothetical protein, at 491,327 to 491,944
SMc01713
SMc01712: SMc01712 - L-lactate dehydrogenase (cytochrome) protein, at 491,966 to 493,177
SMc01712
Position (kb) 490
491
492 Strain fitness (log2 ratio) -2
-1
0
1
2 at 489.642 kb on - strand at 489.642 kb on - strand at 489.646 kb on + strand at 489.845 kb on + strand, within SMc01715 at 489.846 kb on - strand, within SMc01715 at 489.846 kb on - strand, within SMc01715 at 489.941 kb on + strand, within SMc01715 at 489.941 kb on + strand, within SMc01715 at 489.941 kb on + strand, within SMc01715 at 489.941 kb on + strand, within SMc01715 at 489.942 kb on - strand, within SMc01715 at 489.958 kb on + strand, within SMc01715 at 489.959 kb on - strand, within SMc01715 at 490.116 kb on + strand, within SMc01715 at 490.116 kb on + strand, within SMc01715 at 490.117 kb on - strand, within SMc01715 at 490.117 kb on - strand, within SMc01715 at 490.117 kb on - strand, within SMc01715 at 490.233 kb on - strand, within SMc01715 at 490.233 kb on - strand, within SMc01715 at 490.384 kb on + strand at 490.385 kb on - strand at 490.519 kb on + strand at 490.519 kb on + strand at 490.519 kb on + strand at 490.519 kb on + strand at 490.519 kb on + strand at 490.519 kb on + strand at 490.520 kb on - strand at 490.520 kb on - strand at 490.520 kb on - strand at 490.520 kb on - strand at 490.533 kb on + strand at 490.534 kb on - strand at 490.534 kb on - strand at 490.534 kb on - strand at 490.536 kb on + strand at 490.537 kb on - strand at 490.537 kb on - strand at 490.537 kb on - strand at 490.543 kb on + strand at 490.544 kb on - strand at 490.558 kb on - strand at 490.565 kb on + strand at 490.657 kb on - strand at 490.753 kb on + strand, within SMc01714 at 490.754 kb on - strand, within SMc01714 at 490.754 kb on - strand, within SMc01714 at 490.816 kb on + strand, within SMc01714 at 490.816 kb on + strand, within SMc01714 at 490.816 kb on + strand, within SMc01714 at 490.816 kb on + strand, within SMc01714 at 490.816 kb on + strand, within SMc01714 at 490.817 kb on - strand, within SMc01714 at 490.817 kb on - strand, within SMc01714 at 490.818 kb on + strand, within SMc01714 at 490.819 kb on - strand, within SMc01714 at 490.891 kb on + strand, within SMc01714 at 490.891 kb on + strand, within SMc01714 at 490.891 kb on + strand, within SMc01714 at 491.105 kb on + strand at 491.106 kb on - strand at 491.116 kb on + strand at 491.117 kb on - strand at 491.259 kb on + strand at 491.300 kb on - strand at 491.584 kb on + strand, within SMc01713 at 491.585 kb on - strand, within SMc01713 at 491.773 kb on + strand, within SMc01713 at 491.774 kb on - strand, within SMc01713 at 491.895 kb on + strand at 491.895 kb on + strand at 491.895 kb on + strand at 491.896 kb on - strand at 491.902 kb on + strand at 491.902 kb on + strand at 491.902 kb on + strand at 491.903 kb on - strand at 491.903 kb on - strand at 492.001 kb on - strand at 492.110 kb on + strand, within SMc01712 at 492.110 kb on + strand, within SMc01712 at 492.111 kb on - strand, within SMc01712 at 492.112 kb on + strand, within SMc01712 at 492.113 kb on - strand, within SMc01712
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 489,642 - +1.5 489,642 - +1.6 489,646 + -0.1 489,845 + SMc01715 0.15 +0.6 489,846 - SMc01715 0.15 +0.4 489,846 - SMc01715 0.15 +0.4 489,941 + SMc01715 0.29 +0.4 489,941 + SMc01715 0.29 +0.3 489,941 + SMc01715 0.29 -0.1 489,941 + SMc01715 0.29 -0.6 489,942 - SMc01715 0.29 -2.3 489,958 + SMc01715 0.31 +0.4 489,959 - SMc01715 0.31 +0.1 490,116 + SMc01715 0.54 +0.3 490,116 + SMc01715 0.54 -0.4 490,117 - SMc01715 0.54 +0.0 490,117 - SMc01715 0.54 +1.4 490,117 - SMc01715 0.54 +0.5 490,233 - SMc01715 0.71 -0.0 490,233 - SMc01715 0.71 +0.1 490,384 + -1.0 490,385 - +0.5 490,519 + -0.4 490,519 + -0.1 490,519 + -0.8 490,519 + -0.8 490,519 + +2.1 490,519 + -0.1 490,520 - -0.7 490,520 - -1.7 490,520 - -1.3 490,520 - +1.9 490,533 + -0.9 490,534 - +0.9 490,534 - +0.9 490,534 - +1.1 490,536 + -0.6 490,537 - +0.3 490,537 - +1.1 490,537 - +0.2 490,543 + -0.5 490,544 - +0.2 490,558 - -1.4 490,565 + -1.9 490,657 - +0.4 490,753 + SMc01714 0.25 +0.6 490,754 - SMc01714 0.25 +1.6 490,754 - SMc01714 0.25 +1.7 490,816 + SMc01714 0.38 -2.6 490,816 + SMc01714 0.38 +1.3 490,816 + SMc01714 0.38 -0.4 490,816 + SMc01714 0.38 +0.7 490,816 + SMc01714 0.38 +0.4 490,817 - SMc01714 0.38 +1.8 490,817 - SMc01714 0.38 -0.4 490,818 + SMc01714 0.38 +1.7 490,819 - SMc01714 0.39 -0.4 490,891 + SMc01714 0.53 +2.0 490,891 + SMc01714 0.53 +1.2 490,891 + SMc01714 0.53 +0.4 491,105 + -1.1 491,106 - -0.2 491,116 + +0.3 491,117 - +0.4 491,259 + -0.5 491,300 - +0.9 491,584 + SMc01713 0.42 +0.3 491,585 - SMc01713 0.42 -1.7 491,773 + SMc01713 0.72 -0.8 491,774 - SMc01713 0.72 -0.6 491,895 + +0.5 491,895 + -0.9 491,895 + +0.9 491,896 - +0.6 491,902 + -0.5 491,902 + -0.2 491,902 + +1.2 491,903 - -1.3 491,903 - +0.6 492,001 - +1.6 492,110 + SMc01712 0.12 +1.4 492,110 + SMc01712 0.12 -0.7 492,111 - SMc01712 0.12 -0.9 492,112 + SMc01712 0.12 +0.4 492,113 - SMc01712 0.12 -0.8
Or see this region's nucleotide sequence