Strain Fitness in Sinorhizobium meliloti 1021 around SMc01711

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01712 and SMc01711 are separated by 626 nucleotidesSMc01711 and SMc01710 are separated by 118 nucleotides SMc01712: SMc01712 - L-lactate dehydrogenase (cytochrome) protein, at 491,966 to 493,177 SMc01712 SMc01711: SMc01711 - hypothetical protein, at 493,804 to 496,527 SMc01711 SMc01710: SMc01710 - hypothetical protein, at 496,646 to 501,478 SMc01710 Position (kb) 493 494 495 496 497Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 492.942 kb on + strand, within SMc01712at 492.942 kb on + strand, within SMc01712at 492.942 kb on + strand, within SMc01712at 492.943 kb on - strand, within SMc01712at 492.943 kb on - strand, within SMc01712at 492.943 kb on - strand, within SMc01712at 493.031 kb on + strand, within SMc01712at 493.032 kb on - strand, within SMc01712at 493.034 kb on + strand, within SMc01712at 493.034 kb on + strand, within SMc01712at 493.035 kb on - strand, within SMc01712at 493.035 kb on - strand, within SMc01712at 493.150 kb on + strandat 493.151 kb on - strandat 493.151 kb on - strandat 493.206 kb on + strandat 493.207 kb on - strandat 493.207 kb on - strandat 493.551 kb on - strandat 493.641 kb on + strandat 493.642 kb on - strandat 493.650 kb on - strandat 493.651 kb on + strandat 493.651 kb on + strandat 493.651 kb on + strandat 493.651 kb on + strandat 493.651 kb on + strandat 493.651 kb on + strandat 493.651 kb on + strandat 493.651 kb on + strandat 493.652 kb on - strandat 493.652 kb on - strandat 493.652 kb on - strandat 493.652 kb on - strandat 493.652 kb on - strandat 493.652 kb on - strandat 493.652 kb on - strandat 493.800 kb on + strandat 493.800 kb on + strandat 494.048 kb on - strandat 494.055 kb on + strandat 494.056 kb on - strandat 494.056 kb on - strandat 494.098 kb on + strand, within SMc01711at 494.098 kb on + strand, within SMc01711at 494.099 kb on - strand, within SMc01711at 494.099 kb on - strand, within SMc01711at 494.446 kb on + strand, within SMc01711at 494.455 kb on - strand, within SMc01711at 494.515 kb on + strand, within SMc01711at 494.515 kb on + strand, within SMc01711at 494.515 kb on + strand, within SMc01711at 494.515 kb on + strand, within SMc01711at 494.515 kb on + strand, within SMc01711at 494.515 kb on + strand, within SMc01711at 494.515 kb on + strand, within SMc01711at 494.516 kb on - strand, within SMc01711at 494.516 kb on - strand, within SMc01711at 494.516 kb on - strand, within SMc01711at 494.615 kb on - strand, within SMc01711at 494.615 kb on - strand, within SMc01711at 494.685 kb on + strand, within SMc01711at 494.686 kb on - strand, within SMc01711at 494.686 kb on - strand, within SMc01711at 494.687 kb on + strand, within SMc01711at 494.836 kb on - strand, within SMc01711at 494.854 kb on + strand, within SMc01711at 494.855 kb on - strand, within SMc01711at 494.855 kb on - strand, within SMc01711at 494.855 kb on - strand, within SMc01711at 494.855 kb on - strand, within SMc01711at 494.894 kb on - strand, within SMc01711at 494.894 kb on - strand, within SMc01711at 494.896 kb on - strand, within SMc01711at 494.946 kb on + strand, within SMc01711at 494.947 kb on - strand, within SMc01711at 494.947 kb on - strand, within SMc01711at 494.958 kb on + strand, within SMc01711at 494.958 kb on + strand, within SMc01711at 494.958 kb on + strand, within SMc01711at 494.958 kb on + strand, within SMc01711at 494.959 kb on - strand, within SMc01711at 494.959 kb on - strand, within SMc01711at 494.959 kb on - strand, within SMc01711at 494.959 kb on - strand, within SMc01711at 494.959 kb on - strand, within SMc01711at 494.968 kb on + strand, within SMc01711at 494.968 kb on + strand, within SMc01711at 494.968 kb on + strand, within SMc01711at 494.969 kb on - strand, within SMc01711at 494.969 kb on - strand, within SMc01711at 494.982 kb on + strand, within SMc01711at 494.982 kb on + strand, within SMc01711at 494.982 kb on + strand, within SMc01711at 494.982 kb on + strand, within SMc01711at 495.010 kb on - strand, within SMc01711at 495.108 kb on + strand, within SMc01711at 495.108 kb on + strand, within SMc01711at 495.109 kb on - strand, within SMc01711at 495.109 kb on - strand, within SMc01711at 495.109 kb on - strand, within SMc01711at 495.138 kb on + strand, within SMc01711at 495.138 kb on + strand, within SMc01711at 495.138 kb on + strand, within SMc01711at 495.139 kb on - strand, within SMc01711at 495.164 kb on + strand, within SMc01711at 495.164 kb on + strand, within SMc01711at 495.165 kb on - strand, within SMc01711at 495.165 kb on - strand, within SMc01711at 495.165 kb on - strand, within SMc01711at 495.339 kb on + strand, within SMc01711at 495.674 kb on - strand, within SMc01711at 495.865 kb on + strand, within SMc01711at 495.866 kb on - strand, within SMc01711at 495.866 kb on - strand, within SMc01711at 495.946 kb on - strand, within SMc01711at 495.967 kb on - strand, within SMc01711at 496.179 kb on + strand, within SMc01711at 496.289 kb on - strandat 496.289 kb on - strandat 496.309 kb on - strandat 496.360 kb on + strandat 496.360 kb on + strandat 496.360 kb on + strandat 496.360 kb on + strandat 496.361 kb on - strandat 496.369 kb on + strandat 496.369 kb on + strandat 496.369 kb on + strandat 496.369 kb on + strandat 496.370 kb on - strandat 496.370 kb on - strandat 496.370 kb on - strandat 496.525 kb on + strandat 496.611 kb on + strandat 496.632 kb on + strandat 496.632 kb on + strandat 496.769 kb on + strandat 496.770 kb on - strandat 496.779 kb on + strandat 496.969 kb on + strandat 496.970 kb on - strandat 496.983 kb on + strandat 497.387 kb on - strand, within SMc01710at 497.387 kb on - strand, within SMc01710at 497.432 kb on + strand, within SMc01710at 497.432 kb on + strand, within SMc01710at 497.452 kb on + strand, within SMc01710at 497.452 kb on + strand, within SMc01710at 497.462 kb on + strand, within SMc01710at 497.462 kb on + strand, within SMc01710at 497.462 kb on + strand, within SMc01710at 497.462 kb on + strand, within SMc01710at 497.462 kb on + strand, within SMc01710at 497.462 kb on + strand, within SMc01710at 497.462 kb on + strand, within SMc01710at 497.462 kb on + strand, within SMc01710at 497.463 kb on - strandat 497.463 kb on - strand, within SMc01710at 497.463 kb on - strand, within SMc01710at 497.463 kb on - strand, within SMc01710at 497.463 kb on - strand, within SMc01710at 497.463 kb on - strand, within SMc01710

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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492,942 + SMc01712 0.81 -0.1
492,942 + SMc01712 0.81 -0.7
492,942 + SMc01712 0.81 +0.5
492,943 - SMc01712 0.81 -0.5
492,943 - SMc01712 0.81 +0.8
492,943 - SMc01712 0.81 +0.9
493,031 + SMc01712 0.88 +0.5
493,032 - SMc01712 0.88 -0.7
493,034 + SMc01712 0.88 -0.2
493,034 + SMc01712 0.88 +0.4
493,035 - SMc01712 0.88 +1.4
493,035 - SMc01712 0.88 +0.7
493,150 + -2.0
493,151 - +0.1
493,151 - -0.3
493,206 + -0.3
493,207 - -0.3
493,207 - -1.4
493,551 - +0.7
493,641 + -1.4
493,642 - +0.6
493,650 - -0.7
493,651 + +0.5
493,651 + +2.4
493,651 + +1.5
493,651 + -3.1
493,651 + -1.1
493,651 + +0.1
493,651 + -0.1
493,651 + +0.7
493,652 - +2.1
493,652 - -1.3
493,652 - +0.1
493,652 - -0.6
493,652 - +0.3
493,652 - -0.9
493,652 - -1.3
493,800 + +0.5
493,800 + +1.9
494,048 - +0.7
494,055 + +0.0
494,056 - +0.3
494,056 - -0.4
494,098 + SMc01711 0.11 +1.7
494,098 + SMc01711 0.11 -1.0
494,099 - SMc01711 0.11 +1.6
494,099 - SMc01711 0.11 -0.9
494,446 + SMc01711 0.24 +1.1
494,455 - SMc01711 0.24 -0.3
494,515 + SMc01711 0.26 -0.6
494,515 + SMc01711 0.26 -0.3
494,515 + SMc01711 0.26 -0.3
494,515 + SMc01711 0.26 +0.0
494,515 + SMc01711 0.26 -0.2
494,515 + SMc01711 0.26 +1.1
494,515 + SMc01711 0.26 +0.3
494,516 - SMc01711 0.26 -0.3
494,516 - SMc01711 0.26 +0.9
494,516 - SMc01711 0.26 +0.6
494,615 - SMc01711 0.30 -0.7
494,615 - SMc01711 0.30 -0.2
494,685 + SMc01711 0.32 +0.0
494,686 - SMc01711 0.32 +0.6
494,686 - SMc01711 0.32 +1.9
494,687 + SMc01711 0.32 +0.6
494,836 - SMc01711 0.38 -0.4
494,854 + SMc01711 0.39 +0.9
494,855 - SMc01711 0.39 +1.1
494,855 - SMc01711 0.39 -0.1
494,855 - SMc01711 0.39 +0.2
494,855 - SMc01711 0.39 -0.7
494,894 - SMc01711 0.40 -0.7
494,894 - SMc01711 0.40 +0.9
494,896 - SMc01711 0.40 -0.8
494,946 + SMc01711 0.42 +0.0
494,947 - SMc01711 0.42 -0.6
494,947 - SMc01711 0.42 +0.3
494,958 + SMc01711 0.42 -0.0
494,958 + SMc01711 0.42 -0.6
494,958 + SMc01711 0.42 +3.5
494,958 + SMc01711 0.42 +0.3
494,959 - SMc01711 0.42 +1.0
494,959 - SMc01711 0.42 +3.7
494,959 - SMc01711 0.42 +1.8
494,959 - SMc01711 0.42 -0.4
494,959 - SMc01711 0.42 -0.6
494,968 + SMc01711 0.43 +0.1
494,968 + SMc01711 0.43 +0.3
494,968 + SMc01711 0.43 -0.0
494,969 - SMc01711 0.43 +0.8
494,969 - SMc01711 0.43 -0.0
494,982 + SMc01711 0.43 +0.1
494,982 + SMc01711 0.43 +1.1
494,982 + SMc01711 0.43 +0.9
494,982 + SMc01711 0.43 -0.6
495,010 - SMc01711 0.44 -0.4
495,108 + SMc01711 0.48 -0.8
495,108 + SMc01711 0.48 +0.1
495,109 - SMc01711 0.48 -2.1
495,109 - SMc01711 0.48 -1.0
495,109 - SMc01711 0.48 +0.9
495,138 + SMc01711 0.49 +0.7
495,138 + SMc01711 0.49 -0.3
495,138 + SMc01711 0.49 +3.5
495,139 - SMc01711 0.49 -0.6
495,164 + SMc01711 0.50 +1.2
495,164 + SMc01711 0.50 -1.5
495,165 - SMc01711 0.50 +0.3
495,165 - SMc01711 0.50 -0.3
495,165 - SMc01711 0.50 +0.6
495,339 + SMc01711 0.56 -0.9
495,674 - SMc01711 0.69 +3.6
495,865 + SMc01711 0.76 +0.8
495,866 - SMc01711 0.76 -0.1
495,866 - SMc01711 0.76 -0.5
495,946 - SMc01711 0.79 +0.9
495,967 - SMc01711 0.79 +1.7
496,179 + SMc01711 0.87 -0.8
496,289 - +0.9
496,289 - +0.1
496,309 - -0.0
496,360 + +0.6
496,360 + +0.7
496,360 + +0.0
496,360 + -0.3
496,361 - +0.5
496,369 + -0.1
496,369 + -0.2
496,369 + -0.0
496,369 + +0.1
496,370 - -0.4
496,370 - -0.5
496,370 - +0.1
496,525 + -0.9
496,611 + -1.8
496,632 + -0.5
496,632 + +1.0
496,769 + -0.0
496,770 - -0.1
496,779 + +0.4
496,969 + +2.0
496,970 - +0.4
496,983 + +1.1
497,387 - SMc01710 0.15 -0.3
497,387 - SMc01710 0.15 -0.8
497,432 + SMc01710 0.16 -0.3
497,432 + SMc01710 0.16 -2.2
497,452 + SMc01710 0.17 -1.4
497,452 + SMc01710 0.17 +0.7
497,462 + SMc01710 0.17 -1.4
497,462 + SMc01710 0.17 +1.3
497,462 + SMc01710 0.17 -0.7
497,462 + SMc01710 0.17 -0.1
497,462 + SMc01710 0.17 +0.7
497,462 + SMc01710 0.17 -0.1
497,462 + SMc01710 0.17 -1.0
497,462 + SMc01710 0.17 -0.6
497,463 - +0.9
497,463 - SMc01710 0.17 +0.5
497,463 - SMc01710 0.17 +0.4
497,463 - SMc01710 0.17 +1.9
497,463 - SMc01710 0.17 +0.3
497,463 - SMc01710 0.17 -0.4

Or see this region's nucleotide sequence